Literature DB >> 30417870

Conducting Multiple Imaging Modes with One Fluorescence Microscope.

Seongjin Park1, Jiacheng Zhang2, Matthew A Reyer2, Joanna Zareba3, Andrew A Troy4, Jingyi Fei5.   

Abstract

Fluorescence microscopy is a powerful tool to detect biological molecules in situ and monitor their dynamics and interactions in real-time. In addition to conventional epi-fluorescence microscopy, various imaging techniques have been developed to achieve specific experimental goals. Some of the widely used techniques include single-molecule fluorescence resonance energy transfer (smFRET), which can report conformational changes and molecular interactions with angstrom resolution, and single-molecule detection-based super-resolution (SR) imaging, which can enhance the spatial resolution approximately ten to twentyfold compared to diffraction-limited microscopy. Here we present a customer-designed integrated system, which merges multiple imaging methods in one microscope, including conventional epi-fluorescent imaging, single-molecule detection-based SR imaging, and multi-color single-molecule detection, including smFRET imaging. Different imaging methods can be achieved easily and reproducibly by switching optical elements. This set-up is easy to adopt by any research laboratory in biological sciences with a need for routine and diverse imaging experiments at a reduced cost and space relative to building separate microscopes for individual purposes.

Mesh:

Year:  2018        PMID: 30417870      PMCID: PMC6235614          DOI: 10.3791/58320

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  20 in total

Review 1.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

2.  Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.

Authors:  S W Hell; J Wichmann
Journal:  Opt Lett       Date:  1994-06-01       Impact factor: 3.776

3.  Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes.

Authors:  Francisco Balzarotti; Yvan Eilers; Klaus C Gwosch; Arvid H Gynnå; Volker Westphal; Fernando D Stefani; Johan Elf; Stefan W Hell
Journal:  Science       Date:  2016-12-22       Impact factor: 47.728

4.  Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging.

Authors:  Siyuan Wang; Jeffrey R Moffitt; Graham T Dempsey; X Sunney Xie; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

5.  RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA.

Authors:  Jingyi Fei; Digvijay Singh; Qiucen Zhang; Seongjin Park; Divya Balasubramanian; Ido Golding; Carin K Vanderpool; Taekjip Ha
Journal:  Science       Date:  2015-03-20       Impact factor: 47.728

6.  Imaging individual mRNA molecules using multiple singly labeled probes.

Authors:  Arjun Raj; Patrick van den Bogaard; Scott A Rifkin; Alexander van Oudenaarden; Sanjay Tyagi
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

Review 7.  Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations.

Authors:  Rajesh Babu Sekar; Ammasi Periasamy
Journal:  J Cell Biol       Date:  2003-03-03       Impact factor: 10.539

Review 8.  Single-molecule and super-resolution imaging of transcription in living bacteria.

Authors:  Mathew Stracy; Achillefs N Kapanidis
Journal:  Methods       Date:  2017-04-13       Impact factor: 3.608

9.  Ultrabright photoactivatable fluorophores created by reductive caging.

Authors:  Joshua C Vaughan; Shu Jia; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2012-10-28       Impact factor: 28.547

10.  An improved surface passivation method for single-molecule studies.

Authors:  Boyang Hua; Kyu Young Han; Ruobo Zhou; Hajin Kim; Xinghua Shi; Sanjaya C Abeysirigunawardena; Ankur Jain; Digvijay Singh; Vasudha Aggarwal; Sarah A Woodson; Taekjip Ha
Journal:  Nat Methods       Date:  2014-10-12       Impact factor: 28.547

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  2 in total

1.  Kinetic modeling reveals additional regulation at co-transcriptional level by post-transcriptional sRNA regulators.

Authors:  Matthew A Reyer; Shriram Chennakesavalu; Emily M Heideman; Xiangqian Ma; Magda Bujnowska; Lu Hong; Aaron R Dinner; Carin K Vanderpool; Jingyi Fei
Journal:  Cell Rep       Date:  2021-09-28       Impact factor: 9.423

2.  Dynamic interactions between the RNA chaperone Hfq, small regulatory RNAs, and mRNAs in live bacterial cells.

Authors:  Seongjin Park; Karine Prévost; Emily M Heideman; Marie-Claude Carrier; Muhammad S Azam; Matthew A Reyer; Wei Liu; Eric Massé; Jingyi Fei
Journal:  Elife       Date:  2021-02-22       Impact factor: 8.140

  2 in total

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