Literature DB >> 30416273

Single Nucleotide Polymorphism-Based Noninvasive Prenatal Testing: Experience in India.

Ishwar Chander Verma1, Ratna Puri1, Eswarachary Venkataswamy2, Tulika Tayal3, Sheela Nampoorthiri4, Chitra Andrew5, Madhulika Kabra6, Rashmi Bagga7, Mamatha Gowda8, Meenu Batra9, Sridevi Hegde10, Anita Kaul11, Neerja Gupta6, Pallavi Mishra6, Jayshree Ganapathi Subramanian1, Shruti Lingaiah2, Riyaz Akhtar2, Francis Kidangan2, R Chandran2, C Kiran2, G R Ravi Kumar2, V L Ramprasad2, Priya Kadam2.   

Abstract

INTRODUCTION: Noninvasive prenatal testing (NIPT) has revolutionized prenatal screening for chromosomal aneuploidies in some countries. Its implementation has been sporadic in developing countries. Given the genetic variation of the people in different countries, we evaluated the performance of the SNP-based NIPT in India .
MATERIALS AND METHODS: The Panorama™ NIPT was performed in 516 pregnancies, which had tested intermediate-to-high risk on conventional first and second trimester screening. Results were confirmed either by invasive diagnostic testing or by clinical evaluation after birth.
RESULTS: Of 511 samples analyzed, results were obtained in 499 (97.7%). Of these, 480 (98.2%) were low risk and 19 were high risk. A sensitivity of 100% was obtained for detection of trisomies 21, 18, 13 and sex chromosomal abnormalities. The specificity ranged from 99.3 to 100% for abnormalities tested. Taken together, the positive predictive value for trisomies 21, 18, 13 and monosomy X was 85.7%. The average fetal fraction was 8.2%, which is lower than the average observed elsewhere.
CONCLUSION: This is the first report of detailed experience with NIPT in India and demonstrates comparable performance in all aspects of testing to the results elsewhere.

Entities:  

Keywords:  Chromosomal aneuploidies; India; NIPT; Prenatal screening; SNP; Trisomy 13; Trisomy 18; Trisomy 21

Year:  2018        PMID: 30416273      PMCID: PMC6207553          DOI: 10.1007/s13224-017-1061-9

Source DB:  PubMed          Journal:  J Obstet Gynaecol India        ISSN: 0975-6434


  34 in total

1.  Aneuploidy screening: a position statement from a committee on behalf of the Board of the International Society for Prenatal Diagnosis, January 2011.

Authors:  Peter Benn; Antoni Borrell; Jenny Crossley; Howard Cuckle; Lorraine Dugoff; Susan Gross; Jo-Ann Johnson; Ron Maymon; Anthony Odibo; Peter Schielen; Kevin Spencer; Dave Wright; Yuval Yaron
Journal:  Prenat Diagn       Date:  2011-06       Impact factor: 3.050

2.  Position statement from the Chromosome Abnormality Screening Committee on behalf of the Board of the International Society for Prenatal Diagnosis.

Authors:  Peter Benn; Antoni Borrell; Rossa W K Chiu; Howard Cuckle; Lorraine Dugoff; Brigitte Faas; Susan Gross; Tianhua Huang; Joann Johnson; Ron Maymon; Mary Norton; Anthony Odibo; Peter Schielen; Kevin Spencer; Dave Wright; Yuval Yaron
Journal:  Prenat Diagn       Date:  2015-06-04       Impact factor: 3.050

3.  Genome-wide fetal aneuploidy detection by maternal plasma DNA sequencing.

Authors:  Diana W Bianchi; Lawrence D Platt; James D Goldberg; Alfred Z Abuhamad; Amy J Sehnert; Richard P Rava
Journal:  Obstet Gynecol       Date:  2012-05       Impact factor: 7.661

4.  Association of combined first-trimester screen and noninvasive prenatal testing on diagnostic procedures.

Authors:  Sebastian Larion; Steven L Warsof; Letty Romary; Margaret Mlynarczyk; David Peleg; Alfred Z Abuhamad
Journal:  Obstet Gynecol       Date:  2014-06       Impact factor: 7.661

5.  Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study.

Authors:  Rossa W K Chiu; Ranjit Akolekar; Yama W L Zheng; Tak Y Leung; Hao Sun; K C Allen Chan; Fiona M F Lun; Attie T J I Go; Elizabeth T Lau; William W K To; Wing C Leung; Rebecca Y K Tang; Sidney K C Au-Yeung; Helena Lam; Yu Y Kung; Xiuqing Zhang; John M G van Vugt; Ryoko Minekawa; Mary H Y Tang; Jun Wang; Cees B M Oudejans; Tze K Lau; Kypros H Nicolaides; Y M Dennis Lo
Journal:  BMJ       Date:  2011-01-11

6.  Screening for trisomies by cell-free DNA testing of maternal blood: consequences of a failed result.

Authors:  R Revello; L Sarno; A Ispas; R Akolekar; K H Nicolaides
Journal:  Ultrasound Obstet Gynecol       Date:  2016-04-25       Impact factor: 7.299

7.  Single-nucleotide polymorphism-based noninvasive prenatal screening in a high-risk and low-risk cohort.

Authors:  Eugene Pergament; Howard Cuckle; Bernhard Zimmermann; Milena Banjevic; Styrmir Sigurjonsson; Allison Ryan; Megan P Hall; Michael Dodd; Phil Lacroute; Melissa Stosic; Nikhil Chopra; Nathan Hunkapiller; Dennis E Prosen; Sallie McAdoo; Zachary Demko; Asim Siddiqui; Matthew Hill; Matthew Rabinowitz
Journal:  Obstet Gynecol       Date:  2014-08       Impact factor: 7.661

8.  Genomic view on the peopling of India.

Authors:  Rakesh Tamang; Kumarasamy Thangaraj
Journal:  Investig Genet       Date:  2012-10-01

9.  Non-invasive prenatal testing for aneuploidy and beyond: challenges of responsible innovation in prenatal screening.

Authors:  Wybo Dondorp; Guido de Wert; Yvonne Bombard; Diana W Bianchi; Carsten Bergmann; Pascal Borry; Lyn S Chitty; Florence Fellmann; Francesca Forzano; Alison Hall; Lidewij Henneman; Heidi C Howard; Anneke Lucassen; Kelly Ormond; Borut Peterlin; Dragica Radojkovic; Wolf Rogowski; Maria Soller; Aad Tibben; Lisbeth Tranebjærg; Carla G van El; Martina C Cornel
Journal:  Eur J Hum Genet       Date:  2015-03-18       Impact factor: 4.246

10.  Clinical performance of non-invasive prenatal testing (NIPT) using targeted cell-free DNA analysis in maternal plasma with microarrays or next generation sequencing (NGS) is consistent across multiple controlled clinical studies.

Authors:  Renee Stokowski; Eric Wang; Karen White; Annette Batey; Bo Jacobsson; Herb Brar; Madhumitha Balanarasimha; Desiree Hollemon; Andrew Sparks; Kypros Nicolaides; Thomas J Musci
Journal:  Prenat Diagn       Date:  2015-10-25       Impact factor: 3.050

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  3 in total

1.  Audit of the first > 7500 noninvasive prenatal aneuploidy tests in a Swiss genetics center.

Authors:  Anahita Bajka; Michael Bajka; Fabian Chablais; Tilo Burkhardt
Journal:  Arch Gynecol Obstet       Date:  2021-09-17       Impact factor: 2.493

2.  A Critical Evaluation of Validation and Clinical Experience Studies in Non-Invasive Prenatal Testing for Trisomies 21, 18, and 13 and Monosomy X.

Authors:  Zachary Demko; Brittany Prigmore; Peter Benn
Journal:  J Clin Med       Date:  2022-08-15       Impact factor: 4.964

3.  The Level of Free Fetal DNA as Precise Noninvasive Marker for Chromosomal Aneuploidies: First Results from BALTIC Region.

Authors:  Danielius Serapinas; Evelina Boreikaitė; Agnė Bartkevičiūtė; Kristina Norvilaitė; Andrius Narbekovas; Daiva Bartkevičienė
Journal:  Medicina (Kaunas)       Date:  2020-10-30       Impact factor: 2.430

  3 in total

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