Literature DB >> 30414156

Mathematical Modeling of Nuclear Trafficking of FOXO Transcription Factors.

Bradford E Peercy1, Martin F Schneider2.   

Abstract

Nuclear cytoplasmic flux of Foxo transcription factors is paramount in cellular gene regulation. For example, excluding Foxo from skeletal muscle nuclei is necessary to avoid muscle wasting through elevated protein breakdown. Constructing a mathematical model of the signaling process leading to alteration of Foxo nuclear cytoplasm ratio is useful in predicting and interpreting such ratio changes. In this chapter we derive a general mathematical model for nuclear cytoplasmic flux. We apply this model to Foxo flux and take advantage of rapid phosphorylation approximation and conservation conditions to reduce the Foxo flux model. We constrain our model with data from mouse skeletal muscle with applied IGF. This procedure provides an example of what might be called the central approach of mathematical modeling: The cycling of a biological question through mathematical formulation and back to biological interpretation.

Entities:  

Keywords:  Foxo transcription factor; Mathematical modeling; Nuclear cytoplasmic flux; Skeletal muscle

Mesh:

Substances:

Year:  2019        PMID: 30414156      PMCID: PMC7791573          DOI: 10.1007/978-1-4939-8900-3_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

Review 1.  The ins and outs of FoxO shuttling: mechanisms of FoxO translocation and transcriptional regulation.

Authors:  Lars P Van Der Heide; Marco F M Hoekman; Marten P Smidt
Journal:  Biochem J       Date:  2004-06-01       Impact factor: 3.857

Review 2.  Dynamic FoxO transcription factors.

Authors:  Haojie Huang; Donald J Tindall
Journal:  J Cell Sci       Date:  2007-08-01       Impact factor: 5.285

Review 3.  Structure/function relationships underlying regulation of FOXO transcription factors.

Authors:  T Obsil; V Obsilova
Journal:  Oncogene       Date:  2008-04-07       Impact factor: 9.867

4.  Kinetics of nuclear-cytoplasmic translocation of Foxo1 and Foxo3A in adult skeletal muscle fibers.

Authors:  Tova Neustadt Schachter; Tiansheng Shen; Yewei Liu; Martin F Schneider
Journal:  Am J Physiol Cell Physiol       Date:  2012-08-29       Impact factor: 4.249

5.  Identification of ubiquitin ligases required for skeletal muscle atrophy.

Authors:  S C Bodine; E Latres; S Baumhueter; V K Lai; L Nunez; B A Clarke; W T Poueymirou; F J Panaro; E Na; K Dharmarajan; Z Q Pan; D M Valenzuela; T M DeChiara; T N Stitt; G D Yancopoulos; D J Glass
Journal:  Science       Date:  2001-10-25       Impact factor: 47.728

6.  Multiple elements regulate nuclear/cytoplasmic shuttling of FOXO1: characterization of phosphorylation- and 14-3-3-dependent and -independent mechanisms.

Authors:  Xiangshan Zhao; Lixia Gan; Haiyun Pan; Donghui Kan; Michael Majeski; Stephen A Adam; Terry G Unterman
Journal:  Biochem J       Date:  2004-03-15       Impact factor: 3.857

7.  Mathematical modeling reveals modulation of both nuclear influx and efflux of Foxo1 by the IGF-I/PI3K/Akt pathway in skeletal muscle fibers.

Authors:  Robert J Wimmer; Yewei Liu; Tova Neustadt Schachter; David P Stonko; Bradford E Peercy; Martin F Schneider
Journal:  Am J Physiol Cell Physiol       Date:  2014-01-15       Impact factor: 4.249

8.  The IGF-1/PI3K/Akt pathway prevents expression of muscle atrophy-induced ubiquitin ligases by inhibiting FOXO transcription factors.

Authors:  Trevor N Stitt; Doreen Drujan; Brian A Clarke; Frank Panaro; Yekatarina Timofeyva; William O Kline; Michael Gonzalez; George D Yancopoulos; David J Glass
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

Review 9.  The FoxO code.

Authors:  D R Calnan; A Brunet
Journal:  Oncogene       Date:  2008-04-07       Impact factor: 9.867

  9 in total

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