Literature DB >> 30412190

Metagenomics meets read clouds.

Jacqueline Goordial1, Jennifer Ronholm2.   

Abstract

Year:  2018        PMID： 30412190     DOI： 10.1038/nbt.4284

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  9 in total

1.  Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

Authors:  R I Amann; B J Binder; R J Olson; S W Chisholm; R Devereux; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

2.  Insights into the phylogeny and coding potential of microbial dark matter.

Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

3.  Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species.

Authors: 
Journal:  J Hered       Date:  2009-11-05       Impact factor: 2.645

4.  Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle.

Authors:  Xuesong He; Jeffrey S McLean; Anna Edlund; Shibu Yooseph; Adam P Hall; Su-Yang Liu; Pieter C Dorrestein; Eduardo Esquenazi; Ryan C Hunter; Genhong Cheng; Karen E Nelson; Renate Lux; Wenyuan Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

5.  Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Authors:  Donovan H Parks; Christian Rinke; Maria Chuvochina; Pierre-Alain Chaumeil; Ben J Woodcroft; Paul N Evans; Philip Hugenholtz; Gene W Tyson
Journal:  Nat Microbiol       Date:  2017-09-11       Impact factor: 17.745

6.  Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics.

Authors:  Christian Rinke; Janey Lee; Nandita Nath; Danielle Goudeau; Brian Thompson; Nicole Poulton; Elizabeth Dmitrieff; Rex Malmstrom; Ramunas Stepanauskas; Tanja Woyke
Journal:  Nat Protoc       Date:  2014-04-10       Impact factor: 13.491

7.  Genome assembly from synthetic long read clouds.

Authors:  Volodymyr Kuleshov; Michael P Snyder; Serafim Batzoglou
Journal:  Bioinformatics       Date:  2016-06-15       Impact factor: 6.937

8.  Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.

Authors:  Grace X Y Zheng; Billy T Lau; Michael Schnall-Levin; Mirna Jarosz; John M Bell; Christopher M Hindson; Sofia Kyriazopoulou-Panagiotopoulou; Donald A Masquelier; Landon Merrill; Jessica M Terry; Patrice A Mudivarti; Paul W Wyatt; Rajiv Bharadwaj; Anthony J Makarewicz; Yuan Li; Phillip Belgrader; Andrew D Price; Adam J Lowe; Patrick Marks; Gerard M Vurens; Paul Hardenbol; Luz Montesclaros; Melissa Luo; Lawrence Greenfield; Alexander Wong; David E Birch; Steven W Short; Keith P Bjornson; Pranav Patel; Erik S Hopmans; Christina Wood; Sukhvinder Kaur; Glenn K Lockwood; David Stafford; Joshua P Delaney; Indira Wu; Heather S Ordonez; Susan M Grimes; Stephanie Greer; Josephine Y Lee; Kamila Belhocine; Kristina M Giorda; William H Heaton; Geoffrey P McDermott; Zachary W Bent; Francesca Meschi; Nikola O Kondov; Ryan Wilson; Jorge A Bernate; Shawn Gauby; Alex Kindwall; Clara Bermejo; Adrian N Fehr; Adrian Chan; Serge Saxonov; Kevin D Ness; Benjamin J Hindson; Hanlee P Ji
Journal:  Nat Biotechnol       Date:  2016-02-01       Impact factor: 54.908

9.  Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China.

Authors:  Jian-Qiang Su; Xin-Li An; Bing Li; Qing-Lin Chen; Michael R Gillings; Hong Chen; Tong Zhang; Yong-Guan Zhu
Journal:  Microbiome       Date:  2017-07-19       Impact factor: 14.650
  9 in total

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