Literature DB >> 30407190

A comparison of parametric and integrative approaches for X-ray fluorescence analysis applied to a Stroke model.

Andrew M Crawford1, Nicole J Sylvain2, Huishu Hou2, Mark J Hackett3, M Jake Pushie2, Ingrid J Pickering1, Graham N George1, Michael E Kelly2.   

Abstract

Synchrotron X-ray fluorescence imaging enables visualization and quantification of microscopic distributions of elements. This versatile technique has matured to the point where it is used in a wide range of research fields. The method can be used to quantitate the levels of different elements in the image on a pixel-by-pixel basis. Two approaches to X-ray fluorescence image analysis are commonly used, namely, (i) integrative analysis, or window binning, which simply sums the numbers of all photons detected within a specific energy region of interest; and (ii) parametric analysis, or fitting, in which emission spectra are represented by the sum of parameters representing a series of peaks and other contributing factors. This paper presents a quantitative comparison between these two methods of image analysis using X-ray fluorescence imaging of mouse brain-tissue sections; it is shown that substantial errors can result when data from overlapping emission lines are binned rather than fitted. These differences are explored using two different digital signal processing data-acquisition systems with different count-rate and emission-line resolution characteristics. Irrespective of the digital signal processing electronics, there are substantial differences in quantitation between the two approaches. Binning analyses are thus shown to contain significant errors that not only distort the data but in some cases result in complete reversal of trends between different tissue regions.

Entities:  

Keywords:  M-BLANK; X-ray fluorescence; Xpress 3 electronics; strokes; window binning

Year:  2018        PMID: 30407190      PMCID: PMC6225743          DOI: 10.1107/S1600577518010895

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  24 in total

Review 1.  X-ray fluorescence microprobe imaging in biology and medicine.

Authors:  Tatjana Paunesku; Stefan Vogt; Jörg Maser; Barry Lai; Gayle Woloschak
Journal:  J Cell Biochem       Date:  2006-12-15       Impact factor: 4.429

2.  Formation of optical images by X-rays.

Authors:  P KIRKPATRICK; A V BAEZ
Journal:  J Opt Soc Am       Date:  1948-09

3.  Development of a single-cell X-ray fluorescence flow cytometer.

Authors:  Andrew M Crawford; Patrick Kurecka; Tsz Kwan Yim; Claire Kozemchak; Aniruddha Deb; Lubomír Dostál; Cheng Jun Sun; Dale L Brewe; Raul Barrea; James E Penner-Hahn
Journal:  J Synchrotron Radiat       Date:  2016-06-17       Impact factor: 2.616

4.  In vivo calcium imaging reveals functional rewiring of single somatosensory neurons after stroke.

Authors:  Ian R Winship; Timothy H Murphy
Journal:  J Neurosci       Date:  2008-06-25       Impact factor: 6.167

5.  ZntR-mediated transcription of zntA responds to nanomolar intracellular free zinc.

Authors:  Da Wang; Olijahwon Hosteen; Carol A Fierke
Journal:  J Inorg Biochem       Date:  2012-02-22       Impact factor: 4.155

6.  Concurrent Glycogen and Lactate Imaging with FTIR Spectroscopy To Spatially Localize Metabolic Parameters of the Glial Response Following Brain Ischemia.

Authors:  Mark J Hackett; Nicole J Sylvain; Huishu Hou; Sally Caine; Mariam Alaverdashvili; Michael J Pushie; Michael E Kelly
Journal:  Anal Chem       Date:  2016-11-03       Impact factor: 6.986

7.  Imaging of the intracellular topography of copper with a fluorescent sensor and by synchrotron x-ray fluorescence microscopy.

Authors:  Liuchun Yang; Reagan McRae; Maged M Henary; Raxit Patel; Barry Lai; Stefan Vogt; Christoph J Fahrni
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

8.  Trace metals in human plasma and red blood cells. A study of magnesium, chromium, nickel, copper and zinc. II. Observations of patients with some hematologic diseases.

Authors:  W B Herring; B S Leavell; L M Paixao; J H Yoe
Journal:  Am J Clin Nutr       Date:  1960 Nov-Dec       Impact factor: 7.045

Review 9.  Methodological approaches for using synchrotron X-ray fluorescence (SXRF) imaging as a tool in ionomics: examples from Arabidopsis thaliana.

Authors:  Tracy Punshon; Felipe Klein Ricachenevsky; Maria Hindt; Amanda L Socha; Hélène Zuber
Journal:  Metallomics       Date:  2013-09       Impact factor: 4.526

10.  Calcium, magnesium, and other elements in the red blood cells and hair of normals and patients with premenstrual syndrome.

Authors:  Raymond J Shamberger
Journal:  Biol Trace Elem Res       Date:  2003-08       Impact factor: 3.738

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  5 in total

Review 1.  X-ray fluorescence microscopy methods for biological tissues.

Authors:  M Jake Pushie; Nicole J Sylvain; Huishu Hou; Mark J Hackett; Michael E Kelly; Samuel M Webb
Journal:  Metallomics       Date:  2022-06-23       Impact factor: 4.636

2.  Multimodal imaging of hemorrhagic transformation biomarkers in an ischemic stroke model.

Authors:  M J Pushie; M Messmer; N J Sylvain; J Heppner; J M Newton; H Hou; M J Hackett; M E Kelly; L Peeling
Journal:  Metallomics       Date:  2022-04-30       Impact factor: 4.636

3.  In-situ x-ray fluorescence imaging of the endogenous iodine distribution in murine thyroids.

Authors:  Christian Körnig; Theresa Staufer; Oliver Schmutzler; Tanja Bedke; Andres Machicote; Beibei Liu; Yang Liu; Elisabetta Gargioni; Neus Feliu; Wolfgang J Parak; Samuel Huber; Florian Grüner
Journal:  Sci Rep       Date:  2022-02-21       Impact factor: 4.996

4.  Sex differences in the mouse photothrombotic stroke model investigated with X-ray fluorescence microscopy and Fourier transform infrared spectroscopic imaging.

Authors:  J M Newton; M J Pushie; N J Sylvain; H Hou; S Weese Maley; M E Kelly
Journal:  IBRO Neurosci Rep       Date:  2022-08-02

5.  Tracking elemental changes in an ischemic stroke model with X-ray fluorescence imaging.

Authors:  M J Pushie; N J Sylvain; H Hou; S Caine; M J Hackett; M E Kelly
Journal:  Sci Rep       Date:  2020-10-20       Impact factor: 4.379

  5 in total

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