| Literature DB >> 30403758 |
Rachel D Savage1,2, Laura C Rosella1,2,3, Natasha S Crowcroft1,3,4, Maureen Horn5, Kamran Khan6,7, Monali Varia5.
Abstract
An ongoing challenge of estimating the burden of infectious diseases known to disproportionately affect migrants (e.g. malaria, enteric fever) is that many health information systems, including reportable disease surveillance systems, do not systematically collect data on migrant status and related factors. We explored whether health administrative data linked to immigration records offered a viable alternative for accurately identifying cases of hepatitis A, malaria and enteric fever in Ontario, Canada. Using linked health care databases generated by Ontario's universal health care program, we constructed a cohort of medically-attended individuals with presumed hepatitis A, malaria or enteric fever in Peel region using diagnostic codes. Immigrant status was ascertained using linked immigration data. The sensitivity and positive predictive value (PPV) of diagnostic codes was evaluated through probabilistic linkage of the cohort to Ontario's reportable disease surveillance system (iPHIS) as the reference standard. Linkage was successful in 90.0% (289/321) of iPHIS cases. While sensitivity was high for hepatitis A and enteric fever (85.8% and 83.7%) and moderate for malaria (69.0%), PPV was poor for all diseases (0.3-41.3%). The accuracy of diagnostic codes did not vary by immigrant status. A dated coding system for outpatient physician claims and exclusion of new immigrants not yet eligible for health care were key challenges to using health administrative data to identify cases. Despite this, we show that linkages of health administrative and immigration records with reportable disease surveillance data are feasible and have the potential to bridge important gaps in estimating burden using either data source independently. .Entities:
Mesh:
Year: 2018 PMID: 30403758 PMCID: PMC6221317 DOI: 10.1371/journal.pone.0207030
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Study flow chart.
Number of cases and disease incidence rates (per 100,000) as determined by the reference standard (iPHIS) compared to health administrative data, November 20, 2011 to February 11, 2015.
| Disease | iPHIS | Health Administrative Data | ||||
|---|---|---|---|---|---|---|
| Specific Codes | Sensitive Codes | |||||
| n | Rate | n | Rate | n | Rate | |
| Hepatitis A | 55 | 1.36 | 15,992 | 350.90 | 615,903 | 13,514.34 |
| Malaria | 125 | 3.10 | 189 | 4.15 | 666,007 | 14,613.73 |
| Enteric Fever | 141 | 3.49 | 1,755 | 38.51 | 542,101 | 11,894.95 |
a iPHIS, integrated public health information system (the reference standard).
Accuracy of diagnostic codes for hepatitis A, malaria and enteric fever used in health administrative data, overall and by data source, with Ontario’s reportable disease registry (iPHIS) as the reference standard.
| Data Source | Disease | Health Admin. | iPHIS case | Sensitivity | PPV | |
|---|---|---|---|---|---|---|
| + | - | |||||
| All combined | Hepatitis A | + | 41 | 15,951 | 83.7 (73.3–94.0) | 0.3 (0.2–0.3) |
| - | 8 | -- | ||||
| Malaria | + | 78 | 111 | 69.0 (60.5–77.6) | 41.3 (34.3–48.3) | |
| - | 35 | -- | ||||
| Enteric Fever | + | 109 | 1,646 | 85.8 (79.8–91.9) | 6.2 (5.1–7.3) | |
| - | 18 | -- | ||||
| Hospitalizations (ICD-10) | Hepatitis A | + | 18 | 10 | 36.7 (23.2–50.2) | 64.3 (46.5–82.0) |
| - | 31 | -- | ||||
| Malaria | + | 58 | 16 | 51.3 (42.1–60.5) | 78.4 (69.0–87.8) | |
| - | 55 | -- | ||||
| Enteric Fever | + | 78 | 29 | 61.4 (53.0–69.9) | 72.9 (64.5–81.3) | |
| - | 49 | -- | ||||
| Emergency Department Visits (ICD-10) | Hepatitis A | + | 11 | 16 | 22.4 (10.8–34.1) | 40.7 (22.2–59.3) |
| - | 38 | -- | ||||
| Malaria | + | 74 | 49 | 65.5 (56.7–74.3) | 60.2 (51.5–68.8) | |
| - | 39 | -- | ||||
| Enteric Fever | + | 60 | 66 | 47.2 (38.6–55.9) | 47.6 (38.9–56.3) | |
| - | 67 | -- | ||||
| Outpatient physician visits (OHIP) | Hepatitis A | + | 39 | 15,940 | 79.6 (68.3–90.9) | 0.2 (0.2–0.3) |
| - | 10 | -- | ||||
| Malaria | + | 0 | 56 | 0.0 (0.0–0.0) | 0.0 (0.0–0.0) | |
| - | 113 | -- | ||||
| Enteric Fever | + | 99 | 1,580 | 78.0 (70.7–85.2) | 5.9 (4.8–7.0) | |
| - | 28 | -- | ||||
a PPV, positive predictive value.
b CI, confidence interval.
--no data.
Characteristics of true (TP) and false positive (FP) individuals, by disease.
| Characteristics | Hepatitis A | Malaria | Enteric Fever | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| TP | FP | P-value | TP | FP | P-value | TP | FP | P-value | ||
| Sex | Female | 20 (48.8) | 7,356 (46.1) | 0.733 | 25 (32.1) | 59 (53.2) | 0.004 | 47 (43.1) | 895 (54.4) | 0.022 |
| Age (at cohort entry) | median (IQR | 18 (12–25) | 44 (33–55) | < .001 | 43 (28–55) | 29 (12–54) | 0.012 | 27 (9–40) | 44 (26–59) | < .001 |
| Immigrant | Yes | 20 (48.8) | 7,699 (48.3) | 0.948 | 52 (66.7) | 39 (35.1) | < .001 | 61 (56.0) | 723 (43.9) | 0.014 |
| Codes in lookback | Yes | 9 (22.0) | 7,361 (46.1) | 0.002 | 17 (21.8) | 37 (33.3) | 0.084 | 30 (27.5) | 606 (36.8) | 0.051 |
| Source | DADc | 18 (43.9) | 117 (0.7) | < .001 | 58 (74.4) | 16 (14.4) | < .001 | 87 (79.8) | 64 (3.9) | < .001 |
| NACRS | 12 (29.3) | 379 (2.4) | < .001 | 74 (94.9) | 49 (44.1) | < .001 | 76 (69.7) | 146 (8.9) | < .001 | |
| OHIP | 40 (97.6) | 15,950 (100.0) | < .001 | 70 (89.7) | 100 (90.1) | 0.938 | 106 (97.2) | 1,641 (99.7) | < .001 | |
| Number of health encounters/person | median (IQR) | 6 (3–9) | 3 (2–6) | < .001 | 5 (3–7) | 3 (2–6) | 0.002 | 6 (4–10) | 2 (1–4) | < .001 |
| Days from first to last health encounter | median (IQR) | 29 (6–246) | 379 (21–772) | 0.003 | 18 (3–87) | 273 (5–694) | < .001 | 47 (13–321) | 248 (0–672) | 0.158 |
a IQR, interquartile range.
b not mutually exclusive.
c DAD, hospital discharge abstract database for hospitalizations.
d NACRS, National Ambulatory Care Reporting System for emergency department visits.
e OHIP, Ontario’s universal health insurance plan claims database for reimbursement of outpatient physician services.
Characteristics of false negatives.
| Characteristic | Category | Overall (N = 61) | |
|---|---|---|---|
| n | % | ||
| Sex | Female | 18 | 29.5 |
| Age in years | median (IQR | 38 (18–49) | |
| Peel region resident | Yes | 39 | 63.9 |
| Immigrant | Yes | 38 | 62.3 |
| World Region | Asia and Pacific | 21 | 55.3 |
| Other | 17 | 44.7 | |
| Country of birth | India | 23 | 37.7 |
| Other or Unknown | 38 | 85.3 | |
| Diagnostic codes in lookback period | Yes | 9 | 14.8 |
| OHIP | Yes | 48 | 78.7 |
| OHIP | Yes | 43 | 70.5 |
| OHIP | Yes | 42 | 68.9 |
| OHIP | Yes | 39 | 63.9 |
| Hospitalized | Yes | 10 | 16.4 |
| Travel Associatedc | Yes | 47 | 77.1 |
a IQR, interquartile range.
b OHIP, Ontario’s universal health insurance plan claims database for reimbursement of outpatient physician services.
c includes recent immigrant or visitor.
Test characteristics of sensitive (low specificity) health administrative diagnostic codes of hepatitis A, malaria and enteric fever diseases with the reportable disease registry iPHIS as the reference standard.
| Disease | Health Admin. | iPHIS case | Sensitivity | PPV | |
|---|---|---|---|---|---|
| + | - | ||||
| Hepatitis A | test + | 40–50 | 615,855 | 98.0% (94.0–100.0) | 0.0% (0.0–0.0) |
| test - | ≤5 | -- | |||
| Malaria | test + | 95 | 665,912 | 84.1% (77.3–90.8) | 0.0% (0.0–0.0) |
| test - | 18 | -- | |||
| Enteric Fever | test + | 121 | 541,980 | 95.3% (91.6–99.0) | 0.0% (0.0–0.0) |
| test - | 6 | -- | |||
a PPV, positive predictive value.
b CI, confidence interval.
test + refers to having a health encounter with a relevant diagnostic code in a health administrative data source; test − refers to the absence of a health encounter with a relevant diagnostic code.