Literature DB >> 30398107

A Network-Based Cancer Drug Discovery: From Integrated Multi-Omics Approaches to Precision Medicine.

Beste Turanli1,2,3, Kubra Karagoz4, Gizem Gulfidan2, Raghu Sinha5, Adil Mardinoglu3,6,7, Kazim Yalcin Arga2.   

Abstract

A complex framework of interacting partners including genetic, proteomic, and metabolic networks that cooperate to mediate specific functional phenotypes drives human biological processes. Recent technological and analytical advances in "omic" sciences allow the identification and elucidation of reprogramming biological functions in response to perturbations in cells and tissues. To understand such a complex system, biological networks are generated to reduce the complexity into relatively simple models, and the integration of these molecular networks from different perspectives is implemented for a holistic interpretation of the entire system. Ultimately, network-based methods will effectively facilitate the development and improvement of precision medicine by directing therapies based on the underlying biology of a given patient's disease. The goal of precision medicine is to identify novel therapeutic strategies that can be optimized for each disease type or each patient based on the underlying genetic, environmental, and lifestyle factors. Pharmaco-omics analyses based on an integration of pharmacology and various "omics" data types can be employed to develop effective treatment strategies using particular drugs and doses that are tailored to each individual. In the current review, we first present the core elements of network-based systems biology in the context of pharmaco-omics followed by integration of multi-omics data using various biological networks. Next, we provide an opening into precise medicine and drug targeting based on network approaches. Lastly, we review the current significant efforts as well as the accomplishments and limitations in precise drug targeting with the utility of network-based guided drug discovery methods for effective treatment of breast cancer. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.

Entities:  

Keywords:  Drug discovery; breast cancer; drug repositioning; network-based; pharmaco-omics; precision medicine.

Mesh:

Substances:

Year:  2018        PMID: 30398107     DOI: 10.2174/1381612824666181106095959

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  13 in total

1.  The Translational Potential of Neuroimaging Genomic Analyses To Diagnosis And Treatment In The Mental Disorders.

Authors:  Jiayu Chen; Jingyu Liu; Vince D Calhoun
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-05-09       Impact factor: 10.961

2.  Immune Cell Networks Uncover Candidate Biomarkers of Melanoma Immunotherapy Response.

Authors:  Duong H T Vo; Gerard McGleave; Ian M Overton
Journal:  J Pers Med       Date:  2022-06-11

3.  Network Pharmacology-Based Study on the Mechanism of Gegen Qinlian Decoction against Colorectal Cancer.

Authors:  Qiaowei Fan; Lin Guo; Jingming Guan; Jing Chen; Yujing Fan; Zhendong Chen; Hulun Li
Journal:  Evid Based Complement Alternat Med       Date:  2020-11-26       Impact factor: 2.629

Review 4.  Precision medicine: Concept and tools.

Authors:  Nardeep Naithani; Sharmila Sinha; Pratibha Misra; Biju Vasudevan; Rajesh Sahu
Journal:  Med J Armed Forces India       Date:  2021-07-03

Review 5.  Repurposing of drugs for triple negative breast cancer: an overview.

Authors:  Andrea Spini; Sandra Donnini; Pan Pantziarka; Sergio Crispino; Marina Ziche
Journal:  Ecancermedicalscience       Date:  2020-07-13

Review 6.  Formononetin: A Review of Its Anticancer Potentials and Mechanisms.

Authors:  Kai-Ching Tay; Loh Teng-Hern Tan; Chim Kei Chan; Sok Lai Hong; Kok-Gan Chan; Wei Hsum Yap; Priyia Pusparajah; Learn-Han Lee; Bey-Hing Goh
Journal:  Front Pharmacol       Date:  2019-07-26       Impact factor: 5.810

7.  Novel Strategies for Cancer Treatment: Highlights from the 55th IACR Annual Conference.

Authors:  Sara Charmsaz; Denis M Collins; Antoinette S Perry; Maria Prencipe
Journal:  Cancers (Basel)       Date:  2019-08-07       Impact factor: 6.639

Review 8.  The Need for Multi-Omics Biomarker Signatures in Precision Medicine.

Authors:  Michael Olivier; Reto Asmis; Gregory A Hawkins; Timothy D Howard; Laura A Cox
Journal:  Int J Mol Sci       Date:  2019-09-26       Impact factor: 5.923

9.  Pan-cancer mapping of differential protein-protein interactions.

Authors:  Gizem Gulfidan; Beste Turanli; Hande Beklen; Raghu Sinha; Kazim Yalcin Arga
Journal:  Sci Rep       Date:  2020-02-24       Impact factor: 4.379

10.  Classification of clear cell renal cell carcinoma based on PKM alternative splicing.

Authors:  Xiangyu Li; Beste Turanli; Kajetan Juszczak; Woonghee Kim; Muhammad Arif; Yusuke Sato; Seishi Ogawa; Hasan Turkez; Jens Nielsen; Jan Boren; Mathias Uhlen; Cheng Zhang; Adil Mardinoglu
Journal:  Heliyon       Date:  2020-02-19
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