Literature DB >> 30395952

Cell-free transcription-translation: engineering biology from the nanometer to the millimeter scale.

David Garenne1, Vincent Noireaux2.   

Abstract

Cell-free transcription-translation (TXTL) has become a highly versatile technology to construct, characterize and interrogate genetically programmed biomolecular systems implemented outside living organisms. By recapitulating gene expression in vitro, TXTL offers unparalleled flexibility to take apart, engineer and analyze quantitatively the effects of chemical, physical and genetic contexts on the function of biochemical systems, from simple regulatory elements to millimeter-scale pattern formation. Here, we review the capabilities of the current cell-free platforms for executing DNA programs in vitro. We describe the recent advances in programming using cell-free expression, a multidisciplinary playground that has enabled a myriad of novel applications in synthetic biology, biotechnology, and biological physics. Finally, we discuss the challenges and perspectives in the research area of TXTL-based constructive biology.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Year:  2018        PMID: 30395952     DOI: 10.1016/j.copbio.2018.10.007

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  9 in total

1.  Best Practices for DNA Template Preparation Toward Improved Reproducibility in Cell-Free Protein Production.

Authors:  Eugenia F Romantseva; Drew S Tack; Nina Alperovich; David Ross; Elizabeth A Strychalski
Journal:  Methods Mol Biol       Date:  2022

2.  Effects of DNA template preparation on variability in cell-free protein production.

Authors:  Eugenia Romantseva; Nina Alperovich; David Ross; Steven P Lund; Elizabeth A Strychalski
Journal:  Synth Biol (Oxf)       Date:  2022-08-13

Review 3.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology.

Authors:  Richard J R Kelwick; Alexander J Webb; Paul S Freemont
Journal:  Front Bioeng Biotechnol       Date:  2020-05-12

4.  Characterization of Phosphorylation Status and Kinase Activity of Src Family Kinases Expressed in Cell-Based and Cell-Free Protein Expression Systems.

Authors:  Emiko Kinoshita-Kikuta; Eiji Kinoshita; Misaki Suga; Mana Higashida; Yuka Yamane; Tomoka Nakamura; Tohru Koike
Journal:  Biomolecules       Date:  2021-10-02

5.  Decentralizing Cell-Free RNA Sensing With the Use of Low-Cost Cell Extracts.

Authors:  Anibal Arce; Fernando Guzman Chavez; Chiara Gandini; Juan Puig; Tamara Matute; Jim Haseloff; Neil Dalchau; Jenny Molloy; Keith Pardee; Fernán Federici
Journal:  Front Bioeng Biotechnol       Date:  2021-08-23

6.  Akaby-Cell-free protein expression system for linear templates.

Authors:  Wakana Sato; Judee Sharon; Christopher Deich; Nathaniel Gaut; Brock Cash; Aaron E Engelhart; Katarzyna P Adamala
Journal:  PLoS One       Date:  2022-04-07       Impact factor: 3.240

7.  DNA Input Classification by a Riboregulator-Based Cell-Free Perceptron.

Authors:  Ardjan J van der Linden; Pascal A Pieters; Mart W Bartelds; Bryan L Nathalia; Peng Yin; Wilhelm T S Huck; Jongmin Kim; Tom F A de Greef
Journal:  ACS Synth Biol       Date:  2022-04-05       Impact factor: 5.249

Review 8.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology.

Authors:  Nadanai Laohakunakorn; Laura Grasemann; Barbora Lavickova; Grégoire Michielin; Amir Shahein; Zoe Swank; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2020-03-24

9.  Transcription and Translation in Cytomimetic Protocells Perform Most Efficiently at Distinct Macromolecular Crowding Conditions.

Authors:  Mahesh A Vibhute; Mark H Schaap; Roel J M Maas; Frank H T Nelissen; Evan Spruijt; Hans A Heus; Maike M K Hansen; Wilhelm T S Huck
Journal:  ACS Synth Biol       Date:  2020-10-05       Impact factor: 5.110

  9 in total

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