Literature DB >> 30392940

Urinary DNA adductomics - A novel approach for exposomics.

Marcus S Cooke1, Chiung-Wen Hu2, Yuan-Jhe Chang3, Mu-Rong Chao4.   

Abstract

The exposome is a concept that encompasses the totality of internal and external environmental exposures, from conception onwards. Evaluation of the exposome, across the lifecourse represents a significant challenge, e.g., methods/technology may simply not exist to comprehensively assess all exposures, or they may not be applicable to human populations, or may have insufficient sensitivity. Cellular DNA adductomics aims to determine the totality of DNA adducts in the cellular genome. However, application to human populations requires the necessarily invasive sampling of tissue, to obtain sufficient DNA for sensitive analysis, which can represent a logistical and IRB challenge, particularly when investigating vulnerable populations. To circumvent this, we recently applied DNA adductomics to urine, detecting a range of expected and unexpected 2'-deoxyribonucleoside DNA adducts. However, base excision repair, the main DNA repair pathway for non-bulky DNA adducts, and processes such as spontaneous depurination, generate nucleobase adducts. Herein we propose a strategy to simultaneously assess 2'-deoxyribonucleoside and nucleobase adducts, using a widely used mass spectrometic platform (i.e., triple quadrupole tandem mass spectrometry). This will provide a much needed DNA adductomic approach for non-invasively, biomonitoring environmental exposures, through assessing the totality of DNA adducts; contributing to the evaluation of the exposome, across the life-course. Published by Elsevier Ltd.

Entities:  

Keywords:  Adductomics; DNA damage; DNA repair; Environmental exposure; Exposome; Mass spectrometry

Mesh:

Substances:

Year:  2018        PMID: 30392940      PMCID: PMC6279464          DOI: 10.1016/j.envint.2018.10.041

Source DB:  PubMed          Journal:  Environ Int        ISSN: 0160-4120            Impact factor:   9.621


  56 in total

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Journal:  Cancer Res       Date:  2002-03-01       Impact factor: 12.701

3.  The oxidative DNA lesion 8,5'-(S)-cyclo-2'-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cells.

Authors:  P J Brooks; D S Wise; D A Berry; J V Kosmoski; M J Smerdon; R L Somers; H Mackie; A Y Spoonde; E J Ackerman; K Coleman; R E Tarone; J H Robbins
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

4.  Development of a targeted adductomic method for the determination of polycyclic aromatic hydrocarbon DNA adducts using online column-switching liquid chromatography/tandem mass spectrometry.

Authors:  Rajinder Singh; Friederike Teichert; Albrecht Seidel; Jonathan Roach; Rebecca Cordell; Mai-Kim Cheng; Heinrich Frank; William P Steward; Margaret M Manson; Peter B Farmer
Journal:  Rapid Commun Mass Spectrom       Date:  2010-08-30       Impact factor: 2.419

5.  Establishing the background level of base oxidation in human lymphocyte DNA: results of an interlaboratory validation study.

Authors:  Catherine M Gedik; Andrew Collins
Journal:  FASEB J       Date:  2004-11-08       Impact factor: 5.191

6.  Development of a liquid chromatography/tandem mass spectrometry method to investigate the presence of biomarkers of DNA damage in urine related to red meat consumption and risk of colorectal cancer.

Authors:  Chiara Da Pieve; Natasha Sahgal; Sharon A Moore; Maria N Velasco-Garcia
Journal:  Rapid Commun Mass Spectrom       Date:  2013-11-15       Impact factor: 2.419

7.  Quantification of urinary excretion of 1,N6-ethenoadenine, a potential biomarker of lipid peroxidation, in humans by stable isotope dilution liquid chromatography-electrospray ionization-tandem mass spectrometry: comparison with gas chromatography-mass spectrometry.

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8.  Human and methodological sources of variability in the measurement of urinary 8-oxo-7,8-dihydro-2'-deoxyguanosine.

Authors:  Lars Barregard; Peter Møller; Trine Henriksen; Vilas Mistry; Gudrun Koppen; Pavel Rossner; Radim J Sram; Allan Weimann; Henrik E Poulsen; Robert Nataf; Roberta Andreoli; Paola Manini; Tim Marczylo; Patricia Lam; Mark D Evans; Hiroshi Kasai; Kazuaki Kawai; Yun-Shan Li; Kazuo Sakai; Rajinder Singh; Friederike Teichert; Peter B Farmer; Rafal Rozalski; Daniel Gackowski; Agnieszka Siomek; Guillermo T Saez; Concha Cerda; Karin Broberg; Christian Lindh; Mohammad Bakhtiar Hossain; Siamak Haghdoost; Chiung-Wen Hu; Mu-Rong Chao; Kuen-Yuh Wu; Hilmi Orhan; Nilufer Senduran; Raymond J Smith; Regina M Santella; Yali Su; Czarina Cortez; Susan Yeh; Ryszard Olinski; Steffen Loft; Marcus S Cooke
Journal:  Antioxid Redox Signal       Date:  2013-01-31       Impact factor: 8.401

Review 9.  Are we sure we know how to measure 8-oxo-7,8-dihydroguanine in DNA from human cells?

Authors:  Andrew R Collins; Jean Cadet; Lennart Möller; Henrik E Poulsen; Jose Viña
Journal:  Arch Biochem Biophys       Date:  2004-03-01       Impact factor: 4.013

10.  Urinary markers of nucleic acid oxidation and long-term mortality of newly diagnosed type 2 diabetic patients.

Authors:  Kasper Broedbaek; Volkert Siersma; Trine Henriksen; Allan Weimann; Morten Petersen; Jon T Andersen; Espen Jimenez-Solem; Elisabeth S Stovgaard; Lars J Hansen; Jan Erik Henriksen; Steen J Bonnema; Niels de Fine Olivarius; Henrik E Poulsen
Journal:  Diabetes Care       Date:  2011-10-12       Impact factor: 19.112

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  6 in total

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Journal:  Anal Bioanal Chem       Date:  2022-08-31       Impact factor: 4.478

2.  A Comprehensive Database for DNA Adductomics.

Authors:  Giorgia La Barbera; Katrine Dalmo Nommesen; Catalina Cuparencu; Jan Stanstrup; Lars Ove Dragsted
Journal:  Front Chem       Date:  2022-05-27       Impact factor: 5.545

3.  Biomarkers of nucleic acid oxidation - A summary state-of-the-art.

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Journal:  Redox Biol       Date:  2021-01-28       Impact factor: 11.799

4.  Is high resolution a strict requirement for mass spectrometry-based cellular DNA adductomics?

Authors:  Yuan-Jhe Chang; Marcus S Cooke; Yet-Ran Chen; Shun-Fa Yang; Pei-Shan Li; Chiung-Wen Hu; Mu-Rong Chao
Journal:  Chemosphere       Date:  2021-02-15       Impact factor: 8.943

5.  Tackling the Complexity of the Exposome: Considerations from the Gunma University Initiative for Advanced Research (GIAR) Exposome Symposium.

Authors:  Pei Zhang; Manish Arora; Romanas Chaleckis; Tomohiko Isobe; Mohit Jain; Isabel Meister; Erik Melén; Matthew Perzanowski; Federico Torta; Markus R Wenk; Craig E Wheelock
Journal:  Metabolites       Date:  2019-06-06

Review 6.  New horizons of DNA adductome for exploring environmental causes of cancer.

Authors:  Yukari Totsuka; Masatoshi Watanabe; Yingsong Lin
Journal:  Cancer Sci       Date:  2020-10-12       Impact factor: 6.518

  6 in total

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