Literature DB >> 30387998

Roads to Rome: Role of Multiple Cassettes in Cyanobactin RiPP Biosynthesis.

Wenjia Gu1, Debosmita Sardar1, Elizabeth Pierce1, Eric W Schmidt1.   

Abstract

Ribosomally synthesized and post-translationally modified peptides (RiPPs) are ubiquitous natural products. Bioactive RiPPs are produced from a precursor peptide, which is modified by enzymes. Usually, a single product is encoded in a precursor peptide. However, in cyanobactins and several other RiPP pathways, a single precursor peptide encodes multiple bioactive products flanking with recognition sequences known as "cassettes". The role of multiple cassettes in one peptide is mysterious, but in general their presence is a marker of biosynthetic plasticity. Here, we show that in cyanobactin biosynthesis the presence of multiple cassettes confers distributive enzyme processing to multiple steps of the pathway, a feature we propose to be a hallmark of multicassette RiPPs. TruD heterocyclase is stochastic and distributive. Although a canonical biosynthetic route is favored with certain substrates, every conceivable biosynthetic route is accepted. Together, these factors afford greater plasticity to the biosynthetic pathway by equalizing the processing of each cassette, enabling access to chemical diversity.

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Year:  2018        PMID: 30387998      PMCID: PMC6433372          DOI: 10.1021/jacs.8b09328

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  37 in total

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2.  Metabolic model for diversity-generating biosynthesis.

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

3.  Ribosomal synthesis of tricyclic depsipeptides in bloom-forming cyanobacteria.

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Journal:  Chem Biol       Date:  2014-05-22

5.  Structures of cyanobactin maturation enzymes define a family of transamidating proteases.

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Journal:  Chem Biol       Date:  2012-11-21

6.  A peptide ligase and the ribosome cooperate to synthesize the peptide pheganomycin.

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Journal:  Nat Chem Biol       Date:  2014-11-24       Impact factor: 15.040

7.  Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.

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8.  Synthesis of Hybrid Cyclopeptides through Enzymatic Macrocyclization.

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Journal:  ChemistryOpen       Date:  2016-12-13       Impact factor: 2.911

9.  The mechanism of patellamide macrocyclization revealed by the characterization of the PatG macrocyclase domain.

Authors:  Jesko Koehnke; Andrew Bent; Wael E Houssen; David Zollman; Falk Morawitz; Sally Shirran; Jeremie Vendome; Ada F Nneoyiegbe; Laurent Trembleau; Catherine H Botting; Margaret C M Smith; Marcel Jaspars; James H Naismith
Journal:  Nat Struct Mol Biol       Date:  2012-07-15       Impact factor: 15.369

10.  Structural analysis of leader peptide binding enables leader-free cyanobactin processing.

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Journal:  Nat Chem Biol       Date:  2015-06-22       Impact factor: 15.040

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Journal:  Chembiochem       Date:  2019-11-04       Impact factor: 3.164

Review 2.  Recent advances in the biosynthesis of RiPPs from multicore-containing precursor peptides.

Authors:  Garret M Rubin; Yousong Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-02       Impact factor: 3.346

3.  Applying Promiscuous RiPP Enzymes to Peptide Backbone N-Methylation Chemistry.

Authors:  Snigdha Sarkar; Wenjia Gu; Eric W Schmidt
Journal:  ACS Chem Biol       Date:  2022-07-12       Impact factor: 4.634

4.  Control of Nucleophile Chemoselectivity in Cyanobactin YcaO Heterocyclases PatD and TruD.

Authors:  Wenjia Gu; Yiwu Zheng; Taras Pogorelov; Satish K Nair; Eric W Schmidt
Journal:  ACS Chem Biol       Date:  2022-04-14       Impact factor: 4.634

5.  Victorin, the host-selective cyclic peptide toxin from the oat pathogen Cochliobolus victoriae, is ribosomally encoded.

Authors:  Simon C Kessler; Xianghui Zhang; Megan C McDonald; Cameron L M Gilchrist; Zeran Lin; Adriana Rightmyer; Peter S Solomon; B Gillian Turgeon; Yit-Heng Chooi
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-14       Impact factor: 11.205

6.  Structural Basis for a Dual Function ATP Grasp Ligase That Installs Single and Bicyclic ω-Ester Macrocycles in a New Multicore RiPP Natural Product.

Authors:  Gengxiang Zhao; Dalibor Kosek; Hong-Bing Liu; Shannon I Ohlemacher; Brittney Blackburne; Anastasia Nikolskaya; Kira S Makarova; Jiadong Sun; Clifton E Barry Iii; Eugene V Koonin; Fred Dyda; Carole A Bewley
Journal:  J Am Chem Soc       Date:  2021-05-24       Impact factor: 16.383

Review 7.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

8.  Insights into the Mechanism of the Cyanobactin Heterocyclase Enzyme.

Authors:  Ying Ge; Clarissa Melo Czekster; Ona K Miller; Catherine H Botting; Ulrich Schwarz-Linek; James H Naismith
Journal:  Biochemistry       Date:  2019-04-05       Impact factor: 3.162

Review 9.  Translation-Targeting RiPPs and Where to Find Them.

Authors:  Dmitrii Y Travin; Dmitry Bikmetov; Konstantin Severinov
Journal:  Front Genet       Date:  2020-03-31       Impact factor: 4.599

  9 in total

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