| Literature DB >> 30386163 |
Dongqi Liu1,2, Yu Zhou1, Kun Yang1, Xiuyue Zhang1, Yongbai Chen3, Chong Li3, Hua Li4, Zhaobin Song1,5.
Abstract
The releasing program of Chinese sucker (Myxocyprinusasiaticus) has been conducted for years in China. To prevent loss of genetic variation in wild populations, it is important to assess and monitor genetic diversity of broodstocks before release of offspring. Three broodstocks (Pixian Base of Sichuan Fisheries Research Institute, China (PBS), Yibin Base of Sichuan Fisheries Research Institute, China (YBS) and Yibin Rare Aquatic Animal Research Institute, China (YRA)) were investigated using mitochondrial control region and 12 microsatellites. The relatively low genetic diversities of these broodstocks were detected (PBS, haplotype diversity (h) = 0.877, observed heterozygosity (Ho) = 0.416; YBS, h = 0.812, Ho = 0.392; YRA, h = 0.818, Ho = 0.365). PBS showed higher Ho than YBS and YRA (P < 0.05). Genetic divergence (FST) based on microsatellites between PBS and YRA was significant (FST = 0.1270, P < 0.05), the same situation happened between YBS and YRA (FST = 0.1319, P < 0.05). However, divergence between PBS and YBS was not significant (FST = 0.0029, P > 0.05). Structure analysis revealed that YRA were distinct from PBS and YBS. Based on these results, it is important to propose some suggestions of genetic management for artificial propagation of Chinese sucker, such as broodstock exchange among hatcheries and broodstock supplement from wild.Entities:
Keywords: Myxocyprinus asiaticus ; genetic management; genetic varieties; parent fish; resources protection
Year: 2018 PMID: 30386163 PMCID: PMC6207638 DOI: 10.3897/zookeys.792.23785
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Figure 1.Map of sampling sites for the three broodstocks. Key: black triangle Pixian Base of Sichuan Fisheries Research Institute, China (PBS); black star Yinbin Base of Sichuan Fisheries Research Institute, China (YBS); black square Yibin Rare Aquatic Animal Research Institute, China (YRA); broken circle river range where the wild broodstocks source of YBS; broken rectangle river range where the wild broodstocks source of YRA.
Information of the three broodstocks and genetic diversity.
| Broodstock | N | n | h | π |
|
| FIS |
|
|---|---|---|---|---|---|---|---|---|
|
| 60 | 19 | 0.877 | 0.0260 | 8 | 4 | 0.055 | 0.421 |
|
| 53 | 13 | 0.819 | 0.0238 | 10 | 2 | 0.067 | 0.390 |
|
| 21 | 11 | 0.818 | 0.0278 | 11 | 13 | 0.088 | 0.085 |
| Total | 134 | 30 | 0.864 | 0.0287 | 29 | 19 |
N: sample number, n: number of haplotypes, h: haplotype diversity, π: nucleotide diversity, Ra: rare alleles for microsatellites, Pa: private alleles for microsatellites, FIS: mean inbreeding coefficients for microsatellites, P: the p value of FIS
Genetic diversity of the broodstocks based on twelve microsatellite loci.
| Broodstock | Locus | A |
| G |
| PIC | ||
|---|---|---|---|---|---|---|---|---|
|
| MA21 | 5 | 1.933 | 13 | 0.622 | 0.732 | 0.683 | 0.684 |
| MA10 | 6 | 1.650 | 11 | 0.433 | 0.623 | 0.582 | 0.575 | |
| MA61 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA06 | 2 | 1.567 | 3 | 0.378 | 0.420 | 0.392 | 0.331 | |
| MA19 | 7 | 1.867 | 17 | 0.578 | 0.818 | 0.764 | 0.793 | |
| MA53 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA39 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA64 | 3 | 1.983 | 3 | 0.656 | 0.516 | 0.481 | 0.398 | |
| MA04 | 9 | 1.717 | 20 | 0.478 | 0.816 | 0.762 | 0.791 | |
| MA38 | 3 | 1.600 | 5 | 0.400 | 0.584 | 0.545 | 0.519 | |
| MA27 | 16 | 2.683 | 35 | 0.758 | 0.902 | 0.842 | 0.894 | |
| MA13 | 10 | 2.333 | 19 | 0.683 | 0.824 | 0.769 | 0.805 | |
| Means | 5 | 1.694 | 11 | 0.416 | 0.520 | 0.485 | 0.483 | |
|
| MA21 | 4 | 1.900 | 8 | 0.600 | 0.726 | 0.678 | 0.676 |
| MA10 | 5 | 1.833 | 7 | 0.556 | 0.664 | 0.620 | 0.602 | |
| MA61 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA06 | 2 | 1.367 | 3 | 0.244 | 0.406 | 0.379 | 0.323 | |
| MA19 | 7 | 1.733 | 9 | 0.489 | 0.699 | 0.652 | 0.646 | |
| MA53 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA39 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA64 | 2 | 2.000 | 1 | 0.667 | 0.500 | 0.467 | 0.398 | |
| MA04 | 7 | 1.833 | 9 | 0.556 | 0.681 | 0.636 | 0.375 | |
| MA38 | 3 | 1.633 | 5 | 0.422 | 0.531 | 0.496 | 0.519 | |
| MA27 | 13 | 2.733 | 15 | 0.761 | 0.888 | 0.829 | 0.877 | |
| MA13 | 5 | 1.633 | 9 | 0.406 | 0.676 | 0.631 | 0.609 | |
| Means | 4 | 1.639 | 6 | 0.392 | 0.481 | 0.449 | 0.419 | |
|
| MA21 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 |
| MA10 | 6 | 1.710 | 10 | 0.476 | 0.718 | 0.670 | 0.386 | |
| MA61 | 1 | 1.000 | 1 | 0.000 | 0.000 | 0.000 | 0.000 | |
| MA06 | 6 | 1.760 | 10 | 0.508 | 0.782 | 0.730 | 0.431 | |
| MA19 | 3 | 1.140 | 4 | 0.095 | 0.534 | 0.498 | 0.384 | |
| MA53 | 2 | 1.710 | 2 | 0.476 | 0.459 | 0.429 | 0.321 | |
| MA39 | 8 | 1.810 | 10 | 0.540 | 0.756 | 0.706 | 0.598 | |
| MA64 | 3 | 1.950 | 4 | 0.635 | 0.618 | 0.577 | 0.378 | |
| MA04 | 3 | 1.000 | 3 | 0.000 | 0.594 | 0.554 | 0.711 | |
| MA38 | 6 | 1.760 | 10 | 0.508 | 0.724 | 0.676 | 0.739 | |
| MA27 | 7 | 2.000 | 6 | 0.667 | 0.811 | 0.757 | 0.788 | |
| MA13 | 3 | 1.710 | 4 | 0.476 | 0.582 | 0.543 | 0.711 | |
| Mean | 4 | 1.550 | 5 | 0.365 | 0.548 | 0.512 | 0.454 | |
A: number of alleles per locus, Ai: allelic richness within individuals, G: genotype richness, Ho: observed heterozygosity, He (Ce): expected heterozygosity under chromosome segregation, He (Cd): expected heterozygosity under chromatid segregation, PIC: polymorphism information content
Figure 2.Neighbor-joining tree based on FST values of the mtDNA control region (a) and phylogenetic tree of mtDNA control region haplotypes in reconstructed with Bayesian inference (b). Bayesian posterior probabilities and bootstrap values are shown at nodes of neighbor-joining tree and BI tree, respectively. The number behind each haplotype represents the number of individuals from different sampling locations.
Figure 3.Median-joining network of the mtDNA control region haplotypes of . The size of each circle indicates the frequency of the corresponding haplotype in the whole data set.
Figure 4.Results of STRUCTURE of broodstocks based on K = 3. Each column represents one individual and the colors represent the probability membership coefficient of that individual for each genetic cluster.
Figure 5.Neighbor-joining trees of individuals in three broodstocks based on mtDNA control region.
Probabilities from tests (Wilconxon’s) for mutation drift equilibrium (bottlenecks) in the three broodstocks under three mutation models (IAM, TPM and SMM).
| Broodstocks | Mutation-drift test | Model shift | ||
|---|---|---|---|---|
| I.A.M | S.M.M | T.P.M | L-shaped | |
|
| 0.1243 | 0.5431 | 0.3330 | normal |
|
| 0.0465* | 0.6772 | 0.7870 | normal |
|
| 0.0374* | 0.3448 | 0.0625 | normal |
* p < 0.05 (rejection of mutation drift equilibrium)