Literature DB >> 30381949

Simulating the Chelate Effect.

Arkajyoti Sengupta, Anthony Seitz, Kenneth M Merz.   

Abstract

Despite the rich history of experimental studies focusing on the thermochemistry and kinetics associated with the chelate effect, molecular-level computational studies on the chelate ring opening/ring closure are scarce. The challenge lies in an accurate description of both the metal ion and its aqueous environment. Herein, we demonstrate that an optimized 12-6-4 Lennard-Jones (LJ) model can capture the thermodynamics and provide detailed structural and mechanistic insights into the formation of ethylenediamine (en) complexes with metal ions. The water molecules in the first solvation shell of the metal ion are found to facilitate the chelate ring formation. The optimized parameters further simulate the formation of bis and tris(en) complexes representing the wide applicability of the model to simulate coordination chemistry and self-assembly processes.

Entities:  

Year:  2018        PMID: 30381949     DOI: 10.1021/jacs.8b09371

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  3 in total

1.  Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.

Authors:  Arkajyoti Sengupta; Zhen Li; Lin Frank Song; Pengfei Li; Kenneth M Merz
Journal:  J Chem Inf Model       Date:  2021-02-04       Impact factor: 4.956

2.  Systematic Parametrization of Divalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.

Authors:  Zhen Li; Lin Frank Song; Pengfei Li; Kenneth M Merz
Journal:  J Chem Theory Comput       Date:  2020-06-29       Impact factor: 6.006

3.  Pore structure controls stability and molecular flux in engineered protein cages.

Authors:  Lachlan S R Adamson; Nuren Tasneem; Michael P Andreas; William Close; Eric N Jenner; Taylor N Szyszka; Reginald Young; Li Chen Cheah; Alexander Norman; Hugo I MacDermott-Opeskin; Megan L O'Mara; Frank Sainsbury; Tobias W Giessen; Yu Heng Lau
Journal:  Sci Adv       Date:  2022-02-04       Impact factor: 14.136

  3 in total

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