Literature DB >> 30377364

Spatial organization of the somatosensory cortex revealed by osmFISH.

Simone Codeluppi1,2,3, Lars E Borm4,5, Amit Zeisel4,5,6, Gioele La Manno4,5, Josina A van Lunteren7, Camilla I Svensson8, Sten Linnarsson9,10.   

Abstract

Global efforts to create a molecular census of the brain using single-cell transcriptomics are producing a large catalog of molecularly defined cell types. However, spatial information is lacking and new methods are needed to map a large number of cell type-specific markers simultaneously on large tissue areas. Here, we describe a cyclic single-molecule fluorescence in situ hybridization methodology and define the cellular organization of the somatosensory cortex.

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Year:  2018        PMID: 30377364     DOI: 10.1038/s41592-018-0175-z

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  101 in total

1.  Comprehensive Integration of Single-Cell Data.

Authors:  Tim Stuart; Andrew Butler; Paul Hoffman; Christoph Hafemeister; Efthymia Papalexi; William M Mauck; Yuhan Hao; Marlon Stoeckius; Peter Smibert; Rahul Satija
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

2.  Starfish enterprise: finding RNA patterns in single cells.

Authors:  Jeffrey M Perkel
Journal:  Nature       Date:  2019-08       Impact factor: 49.962

Review 3.  Multiplex bioimaging of single-cell spatial profiles for precision cancer diagnostics and therapeutics.

Authors:  Mayar Allam; Shuangyi Cai; Ahmet F Coskun
Journal:  NPJ Precis Oncol       Date:  2020-05-01

4.  Spatial tissue profiling by imaging-free molecular tomography.

Authors:  Halima Hannah Schede; Christian G Schneider; Johanna Stergiadou; Lars E Borm; Anurag Ranjak; Tracy M Yamawaki; Fabrice P A David; Peter Lönnerberg; Maria Antonietta Tosches; Simone Codeluppi; Gioele La Manno
Journal:  Nat Biotechnol       Date:  2021-04-19       Impact factor: 54.908

Review 5.  Beyond bulk: a review of single cell transcriptomics methodologies and applications.

Authors:  Ashwinikumar Kulkarni; Ashley G Anderson; Devin P Merullo; Genevieve Konopka
Journal:  Curr Opin Biotechnol       Date:  2019-04-10       Impact factor: 9.740

6.  Fluorescence In Situ Imaging of Dendritic RNAs at Single-Molecule Resolution.

Authors:  Mona Batish; Sanjay Tyagi
Journal:  Curr Protoc Neurosci       Date:  2019-09

Review 7.  Classification of Midbrain Dopamine Neurons Using Single-Cell Gene Expression Profiling Approaches.

Authors:  Jean-Francois Poulin; Zachary Gaertner; Oscar Andrés Moreno-Ramos; Rajeshwar Awatramani
Journal:  Trends Neurosci       Date:  2020-02-11       Impact factor: 13.837

Review 8.  Deciphering immune mechanisms in chronic inflammatory demyelinating polyneuropathies.

Authors:  Jolien Wolbert; Mandy I Cheng; Gerd Meyer zu Horste; Maureen A Su
Journal:  JCI Insight       Date:  2020-02-13

Review 9.  Using single-cell technologies to map the human immune system - implications for nephrology.

Authors:  Benjamin J Stewart; John R Ferdinand; Menna R Clatworthy
Journal:  Nat Rev Nephrol       Date:  2019-12-12       Impact factor: 28.314

Review 10.  Integrative Methods and Practical Challenges for Single-Cell Multi-omics.

Authors:  Anjun Ma; Adam McDermaid; Jennifer Xu; Yuzhou Chang; Qin Ma
Journal:  Trends Biotechnol       Date:  2020-03-26       Impact factor: 19.536

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