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Literature DB >> 30377345

A community-developed open-source computational ecosystem for big neuro data.

Joshua T Vogelstein¹, Eric Perlman², Benjamin Falk², Alex Baden², William Gray Roncal³, Vikram Chandrashekhar², Forrest Collman⁴, Sharmishtaa Seshamani⁴, Jesse L Patsolic², Kunal Lillaney², Michael Kazhdan², Robert Hider³, Derek Pryor³, Jordan Matelsky³, Timothy Gion³, Priya Manavalan³, Brock Wester³, Mark Chevillet⁵, Eric T Trautman⁶, Khaled Khairy⁶, Eric Bridgeford², Dean M Kleissas⁷, Daniel J Tward², Ailey K Crow⁸, Brian Hsueh⁸, Matthew A Wright⁸, Michael I Miller², Stephen J Smith⁴, R Jacob Vogelstein⁷, Karl Deisseroth⁸, Randal Burns².

Abstract

Entities: Gene Species

Mesh：

Year: 2018 PMID： 30377345 PMCID： PMC6481161 DOI： 10.1038/s41592-018-0181-1

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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22 in total

1. Multi-Node Multi-GPU Diffeomorphic Image Registration for Large-Scale Imaging Problems.

Authors: Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang
Journal: Int Conf High Perform Comput Netw Storage Anal Date: 2020-11

2. Cellular anatomy of the mouse primary motor cortex.

Authors: Rodrigo Muñoz-Castañeda; Brian Zingg; Katherine S Matho; Xiaoyin Chen; Quanxin Wang; Nicholas N Foster; Anan Li; Arun Narasimhan; Karla E Hirokawa; Bingxing Huo; Samik Bannerjee; Laura Korobkova; Chris Sin Park; Young-Gyun Park; Michael S Bienkowski; Uree Chon; Diek W Wheeler; Xiangning Li; Yun Wang; Maitham Naeemi; Peng Xie; Lijuan Liu; Kathleen Kelly; Xu An; Sarojini M Attili; Ian Bowman; Anastasiia Bludova; Ali Cetin; Liya Ding; Rhonda Drewes; Florence D'Orazi; Corey Elowsky; Stephan Fischer; William Galbavy; Lei Gao; Jesse Gillis; Peter A Groblewski; Lin Gou; Joel D Hahn; Joshua T Hatfield; Houri Hintiryan; Junxiang Jason Huang; Hideki Kondo; Xiuli Kuang; Philip Lesnar; Xu Li; Yaoyao Li; Mengkuan Lin; Darrick Lo; Judith Mizrachi; Stephanie Mok; Philip R Nicovich; Ramesh Palaniswamy; Jason Palmer; Xiaoli Qi; Elise Shen; Yu-Chi Sun; Huizhong W Tao; Wayne Wakemen; Yimin Wang; Shenqin Yao; Jing Yuan; Huiqing Zhan; Muye Zhu; Lydia Ng; Li I Zhang; Byung Kook Lim; Michael Hawrylycz; Hui Gong; James C Gee; Yongsoo Kim; Kwanghun Chung; X William Yang; Hanchuan Peng; Qingming Luo; Partha P Mitra; Anthony M Zador; Hongkui Zeng; Giorgio A Ascoli; Z Josh Huang; Pavel Osten; Julie A Harris; Hong-Wei Dong
Journal: Nature Date: 2021-10-06 Impact factor: 49.962

3. CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping.

Authors: Tomoyuki Mano; Ken Murata; Kazuhiro Kon; Chika Shimizu; Hiroaki Ono; Shoi Shi; Rikuhiro G Yamada; Kazunari Miyamichi; Etsuo A Susaki; Kazushige Touhara; Hiroki R Ueda
Journal: Cell Rep Methods Date: 2021-06-21

4. Application of the hierarchical bootstrap to multi-level data in neuroscience.

Authors: Varun Saravanan; Gordon J Berman; Samuel J Sober
Journal: Neuron Behav Data Anal Theory Date: 2020-07-21

Review 5. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics.

Authors: Adam S Charles; Benjamin Falk; Nicholas Turner; Talmo D Pereira; Daniel Tward; Benjamin D Pedigo; Jaewon Chung; Randal Burns; Satrajit S Ghosh; Justus M Kebschull; William Silversmith; Joshua T Vogelstein
Journal: Annu Rev Neurosci Date: 2020-04-13 Impact factor: 15.553

A community-developed open-source computational ecosystem for big neuro data.

1. Multi-Node Multi-GPU Diffeomorphic Image Registration for Large-Scale Imaging Problems.

2. Cellular anatomy of the mouse primary motor cortex.

3. CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping.

4. Application of the hierarchical bootstrap to multi-level data in neuroscience.

Review 5. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics.

Review 6. Why Study the History of Neuroscience?

7. CEM500K, a large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning.

Review 8. Upscaling X-ray nanoimaging to macroscopic specimens.

9. A substrate for modular, extensible data-visualization.

10. DotMotif: an open-source tool for connectome subgraph isomorphism search and graph queries.