Literature DB >> 30374456

Dynamic processing of DOM: Insight from Exometabolomics, Fluorescence Spectroscopy, and Mass Spectrometry.

H J Smith1, M Tigges2, J D'Andrilli3, A Parker1,4, B Bothner2, C M Foreman1,5.   

Abstract

Dissolved organic matter (DOM) in freshwater environments is an important source of organic carbon, supporting bacterial respiration. Frozen environments cover vast expanses of our planet, with glaciers and ice-sheets storing upwards of six petagrams of organic carbon. It is generally believed that DOM liberated from ice stimulates downstream environments. If true, glacial DOM is an important component of global carbon cycling. However, coupling the release of DOM to microbial activity is challenging due to the molecular complexity of DOM and the metabolic connectivity within microbial communities. Using a single environmentally relevant organism, we demonstrate that processing of compositionally diverse DOM occurs, but, even though glacially derived DOM is chemically labile, it is unable to support sustained respiration. In view of projected changes in glacier DOM export, these findings imply that biogeochemical impacts on downstream environments will depend on the reactivity and heterogeneity of liberated DOM, as well as the timescale.

Entities:  

Keywords:  FT-ICR MS; biological lability; carbon cycling; dissolved organic matter; exometabolomics

Year:  2018        PMID: 30374456      PMCID: PMC6203345          DOI: 10.1002/lol2.10082

Source DB:  PubMed          Journal:  Limnol Oceanogr Lett        ISSN: 2378-2242


  17 in total

1.  Production of refractory dissolved organic matter by bacteria.

Authors:  H Ogawa; Y Amagai; I Koike; K Kaiser; R Benner
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

Review 2.  The expanding role of mass spectrometry in metabolite profiling and characterization.

Authors:  Elizabeth J Want; Benjamin F Cravatt; Gary Siuzdak
Journal:  Chembiochem       Date:  2005-11       Impact factor: 3.164

3.  XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.

Authors:  Colin A Smith; Elizabeth J Want; Grace O'Maille; Ruben Abagyan; Gary Siuzdak
Journal:  Anal Chem       Date:  2006-02-01       Impact factor: 6.986

4.  Advanced instrumental approaches for characterization of marine dissolved organic matter: extraction techniques, mass spectrometry, and nuclear magnetic resonance spectroscopy.

Authors:  Kenneth Mopper; Aron Stubbins; Jason D Ritchie; Heidi M Bialk; Patrick G Hatcher
Journal:  Chem Rev       Date:  2007-02       Impact factor: 60.622

Review 5.  The impact of microbial metabolism on marine dissolved organic matter.

Authors:  Elizabeth B Kujawinski
Journal:  Ann Rev Mar Sci       Date:  2011

6.  Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton.

Authors:  Craig E Nelson; Craig A Carlson
Journal:  Environ Microbiol       Date:  2012-04-17       Impact factor: 5.491

Review 7.  Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean.

Authors:  Nianzhi Jiao; Gerhard J Herndl; Dennis A Hansell; Ronald Benner; Gerhard Kattner; Steven W Wilhelm; David L Kirchman; Markus G Weinbauer; Tingwei Luo; Feng Chen; Farooq Azam
Journal:  Nat Rev Microbiol       Date:  2010-07-05       Impact factor: 60.633

8.  Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean.

Authors:  Byron E Pedler; Lihini I Aluwihare; Farooq Azam
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-14       Impact factor: 11.205

9.  Application of micro-electrospray liquid chromatography techniques to FT-ICR MS to enable high-sensitivity biological analysis.

Authors:  M R Emmett; F M White; C L Hendrickson; S D Shi; A G Marshall
Journal:  J Am Soc Mass Spectrom       Date:  1998-04       Impact factor: 3.262

10.  Draft Genome Sequence and Description of Janthinobacterium sp. Strain CG3, a Psychrotolerant Antarctic Supraglacial Stream Bacterium.

Authors:  Heidi Smith; Tatsuya Akiyama; Christine Foreman; Michael Franklin; Tanja Woyke; Hazuki Teshima; Karen Davenport; Hajnalka Daligault; Tracy Erkkila; Lynne Goodwin; Wei Gu; Yan Xu; Patrick Chain
Journal:  Genome Announc       Date:  2013-11-21
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  2 in total

Review 1.  Characterizing Natural Organic Matter Transformations by Microbial Communities in Terrestrial Subsurface Ecosystems: A Critical Review of Analytical Techniques and Challenges.

Authors:  Kristine Grace M Cabugao; Sara Gushgari-Doyle; Stephany S Chacon; Xiaoqin Wu; Amrita Bhattacharyya; Nicholas Bouskill; Romy Chakraborty
Journal:  Front Microbiol       Date:  2022-05-04       Impact factor: 6.064

2.  A new conceptual framework for the transformation of groundwater dissolved organic matter.

Authors:  Liza K McDonough; Martin S Andersen; Megan I Behnke; Helen Rutlidge; Phetdala Oudone; Karina Meredith; Denis M O'Carroll; Isaac R Santos; Christopher E Marjo; Robert G M Spencer; Amy M McKenna; Andy Baker
Journal:  Nat Commun       Date:  2022-04-20       Impact factor: 17.694

  2 in total

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