Literature DB >> 30368961

Catalytic mechanism of DNA polymerases-Two metal ions or three?

Ming-Daw Tsai1,2.   

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Year:  2018        PMID： 30368961      PMCID： PMC6319748          DOI： 10.1002/pro.3542

Source DB:  PubMed          Journal:  Protein Sci        ISSN： 0961-8368            Impact factor:   6.725


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  20 in total

1.  Viewing Human DNA Polymerase β Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.

Authors:  Rajan Vyas; Andrew J Reed; E John Tokarsky; Zucai Suo
Journal:  J Am Chem Soc       Date:  2015-04-09       Impact factor: 15.419

2.  Use of viscogens, dNTPalphaS, and rhodium(III) as probes in stopped-flow experiments to obtain new evidence for the mechanism of catalysis by DNA polymerase beta.

Authors:  Marina Bakhtina; Soojin Lee; Yu Wang; Chris Dunlap; Brandon Lamarche; Ming-Daw Tsai
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

3.  Observing a DNA polymerase choose right from wrong.

Authors:  Bret D Freudenthal; William A Beard; David D Shock; Samuel H Wilson
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

4.  Capture of a third Mg²⁺ is essential for catalyzing DNA synthesis.

Authors:  Yang Gao; Wei Yang
Journal:  Science       Date:  2016-06-10       Impact factor: 47.728

5.  Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase.

Authors:  Andrew J Reed; Rajan Vyas; Austin T Raper; Zucai Suo
Journal:  J Am Chem Soc       Date:  2016-12-27       Impact factor: 15.419

Review 6.  Kinetic Mechanism of DNA Polymerases: Contributions of Conformational Dynamics and a Third Divalent Metal Ion.

Authors:  Austin T Raper; Andrew J Reed; Zucai Suo
Journal:  Chem Rev       Date:  2018-06-04       Impact factor: 60.622

7.  Watching DNA polymerase η make a phosphodiester bond.

Authors:  Teruya Nakamura; Ye Zhao; Yuriko Yamagata; Yue-jin Hua; Wei Yang
Journal:  Nature       Date:  2012-07-11       Impact factor: 49.962

8.  Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide.

Authors:  Bret D Freudenthal; William A Beard; Lalith Perera; David D Shock; Taejin Kim; Tamar Schlick; Samuel H Wilson
Journal:  Nature       Date:  2014-11-17       Impact factor: 49.962

9.  Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.

Authors:  Joonas A Jamsen; William A Beard; Lars C Pedersen; David D Shock; Andrea F Moon; Juno M Krahn; Katarzyna Bebenek; Thomas A Kunkel; Samuel H Wilson
Journal:  Nat Commun       Date:  2017-08-15       Impact factor: 14.919

10.  Revealing the role of the product metal in DNA polymerase β catalysis.

Authors:  Lalith Perera; Bret D Freudenthal; William A Beard; Lee G Pedersen; Samuel H Wilson
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971
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  5 in total

Review 1.  A structural view of bacterial DNA replication.

Authors:  Aaron J Oakley
Journal:  Protein Sci       Date:  2019-04-17       Impact factor: 6.725

2.  Extensive free-energy simulations identify water as the base in nucleotide addition by DNA polymerase.

Authors:  Daniel Roston; Darren Demapan; Qiang Cui
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-22       Impact factor: 11.205

Review 3.  Two-Metal-Ion Catalysis: Inhibition of DNA Polymerase Activity by a Third Divalent Metal Ion.

Authors:  Jimin Wang; William H Konigsberg
Journal:  Front Mol Biosci       Date:  2022-03-01

4.  Distinctive features of the respiratory syncytial virus priming loop compared to other non-segmented negative strand RNA viruses.

Authors:  Tessa N Cressey; Afzaal M Shareef; Victoria A Kleiner; Sarah L Noton; Patrick O Byrne; Jason S McLellan; Elke Mühlberger; Rachel Fearns
Journal:  PLoS Pathog       Date:  2022-06-22       Impact factor: 7.464

Review 5.  Structural and Molecular Kinetic Features of Activities of DNA Polymerases.

Authors:  Aleksandra A Kuznetsova; Olga S Fedorova; Nikita A Kuznetsov
Journal:  Int J Mol Sci       Date:  2022-06-07       Impact factor: 6.208
  5 in total

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