Literature DB >> 30364956

HMDD v3.0: a database for experimentally supported human microRNA-disease associations.

Zhou Huang1, Jiangcheng Shi1, Yuanxu Gao1, Chunmei Cui1, Shan Zhang2, Jianwei Li1,2, Yuan Zhou1, Qinghua Cui1,3.   

Abstract

Comprehensive databases of microRNA-disease associations are continuously demanded in biomedical researches. The recently launched version 3.0 of Human MicroRNA Disease Database (HMDD v3.0) manually collects a significant number of miRNA-disease association entries from literature. Comparing to HMDD v2.0, this new version contains 2-fold more entries. Besides, the associations have been more accurately classified based on literature-derived evidence code, which results in six generalized categories (genetics, epigenetics, target, circulation, tissue and other) covering 20 types of detailed evidence code. Furthermore, we added new functionalities like network visualization on the web interface. To exemplify the utility of the database, we compared the disease spectrum width of miRNAs (DSW) and the miRNA spectrum width of human diseases (MSW) between version 3.0 and 2.0 of HMDD. HMDD is freely accessible at http://www.cuilab.cn/hmdd. With accumulating evidence of miRNA-disease associations, HMDD database will keep on growing in the future.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 30364956      PMCID: PMC6323994          DOI: 10.1093/nar/gky1010

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  29 in total

Review 1.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 2.  The functions of animal microRNAs.

Authors:  Victor Ambros
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

3.  MicroRNAs as tumor suppressors.

Authors:  Scott M Hammond
Journal:  Nat Genet       Date:  2007-05       Impact factor: 38.330

4.  MicroRNA expression profiles classify human cancers.

Authors:  Jun Lu; Gad Getz; Eric A Miska; Ezequiel Alvarez-Saavedra; Justin Lamb; David Peck; Alejandro Sweet-Cordero; Benjamin L Ebert; Raymond H Mak; Adolfo A Ferrando; James R Downing; Tyler Jacks; H Robert Horvitz; Todd R Golub
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

5.  Most mammalian mRNAs are conserved targets of microRNAs.

Authors:  Robin C Friedman; Kyle Kai-How Farh; Christopher B Burge; David P Bartel
Journal:  Genome Res       Date:  2008-10-27       Impact factor: 9.043

6.  PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.

Authors:  Andreas Ruepp; Andreas Kowarsch; Daniel Schmidl; Felix Buggenthin; Barbara Brauner; Irmtraud Dunger; Gisela Fobo; Goar Frishman; Corinna Montrone; Fabian J Theis
Journal:  Genome Biol       Date:  2010-01-20       Impact factor: 13.583

Review 7.  Oncomirs - microRNAs with a role in cancer.

Authors:  Aurora Esquela-Kerscher; Frank J Slack
Journal:  Nat Rev Cancer       Date:  2006-04       Impact factor: 60.716

8.  dbDEMC: a database of differentially expressed miRNAs in human cancers.

Authors:  Zhen Yang; Fei Ren; Changning Liu; Shunmin He; Gang Sun; Qian Gao; Lei Yao; Yangde Zhang; Ruoyu Miao; Ying Cao; Yi Zhao; Yang Zhong; Haitao Zhao
Journal:  BMC Genomics       Date:  2010-12-02       Impact factor: 3.969

9.  miR2Disease: a manually curated database for microRNA deregulation in human disease.

Authors:  Qinghua Jiang; Yadong Wang; Yangyang Hao; Liran Juan; Mingxiang Teng; Xinjun Zhang; Meimei Li; Guohua Wang; Yunlong Liu
Journal:  Nucleic Acids Res       Date:  2008-10-15       Impact factor: 16.971

10.  An analysis of human microRNA and disease associations.

Authors:  Ming Lu; Qipeng Zhang; Min Deng; Jing Miao; Yanhong Guo; Wei Gao; Qinghua Cui
Journal:  PLoS One       Date:  2008-10-15       Impact factor: 3.240

View more
  157 in total

1.  Circulating microRNAs from serum exosomes as potential biomarkers in patients with spontaneous abortion.

Authors:  Shichao Cui; Jiayu Zhang; Jingwei Li; Haiwang Wu; Huimin Zhang; Qingying Yu; Yuexi Zhou; Xiaoli Lv; Yanlan Zhong; Songping Luo; Jie Gao
Journal:  Am J Transl Res       Date:  2021-05-15       Impact factor: 4.060

2.  Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19.

Authors:  Basavaraj Vastrad; Chanabasayya Vastrad; Anandkumar Tengli
Journal:  Gene Rep       Date:  2020-11-04

3.  ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs.

Authors:  Wenliang Zhang; Guocai Yao; Jianbo Wang; Minglei Yang; Jing Wang; Haiyue Zhang; Weizhong Li
Journal:  RNA Biol       Date:  2020-03-26       Impact factor: 4.652

Review 4.  miRNAs emerge as circulating biomarkers of post-myocardial infarction heart failure.

Authors:  Marina Sampaio Cruz; Ananília Medeiros Gomes da Silva; Karla Simone Costa de Souza; André Ducati Luchessi; Vivian Nogueira Silbiger
Journal:  Heart Fail Rev       Date:  2020-03       Impact factor: 4.214

5.  A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs.

Authors:  Lin Yuan; Jing Zhao; Tao Sun; Zhen Shen
Journal:  BMC Bioinformatics       Date:  2021-06-16       Impact factor: 3.169

Review 6.  Small molecule recognition of disease-relevant RNA structures.

Authors:  Samantha M Meyer; Christopher C Williams; Yoshihiro Akahori; Toru Tanaka; Haruo Aikawa; Yuquan Tong; Jessica L Childs-Disney; Matthew D Disney
Journal:  Chem Soc Rev       Date:  2020-10-05       Impact factor: 54.564

7.  Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities.

Authors:  Zhen-Hao Guo; Zhu-Hong You; Yan-Bin Wang; De-Shuang Huang; Hai-Cheng Yi; Zhan-Heng Chen
Journal:  Gigascience       Date:  2020-06-01       Impact factor: 6.524

8.  The circRNA-miRNA-mRNA regulatory network in systemic lupus erythematosus.

Authors:  Junhui Zhang; Yuan Liu; Guixiu Shi
Journal:  Clin Rheumatol       Date:  2020-06-12       Impact factor: 2.980

9.  Phenotype-genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs.

Authors:  Rongrong Wu; Yuxin Lin; Xingyun Liu; Chaoying Zhan; Hongxin He; Manhong Shi; Zhi Jiang; Bairong Shen
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

10.  miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.

Authors:  Fabian Kern; Tobias Fehlmann; Jeffrey Solomon; Louisa Schwed; Nadja Grammes; Christina Backes; Kendall Van Keuren-Jensen; David Wesley Craig; Eckart Meese; Andreas Keller
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.