Literature DB >> 30364770

NON-EUCLIDEAN, CONVOLUTIONAL LEARNING ON CORTICAL BRAIN SURFACES.

Mahmoud Mostapha1, SunHyung Kim2, Guorong Wu3, Leo Zsembik2, Stephen Pizer1,3, Martin Styner1,2.   

Abstract

In recent years there have been many studies indicating that multiple cortical features, extracted at each surface vertex, are promising in the detection of various neurodevelopmental and neurodegenerative diseases. However, with limited datasets, it is challenging to train stable classifiers with such high-dimensional surface data. This necessitates a feature reduction that is commonly accomplished via regional volumetric morphometry from standard brain atlases. However, current regional summaries are not specific to the given age or pathology that is studied, which runs the risk of losing relevant information that can be critical in the classification process. To solve this issue, this paper proposes a novel data-driven approach by extending convolutional neural networks (CNN) for use on non-Euclidean manifolds such as cortical surfaces. The proposed network learns the most powerful features and brain regions from the extracted large dimensional feature space; thus creating a new feature space in which the dimensionality is reduced and feature distributions are better separated. We demonstrate the usability of the proposed surface-CNN framework in an example study classifying Alzheimers disease patients versus normal controls. The high performance in the cross-validation diagnostic results shows the potential of our proposed prediction system.

Entities:  

Keywords:  Alzheimer’s Disease; Convolutional Neural Network; Cortical Surfaces; Deep Learning; MRI

Year:  2018        PMID: 30364770      PMCID: PMC6197818          DOI: 10.1109/ISBI.2018.8363631

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  6 in total

1.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.

Authors:  Rahul S Desikan; Florent Ségonne; Bruce Fischl; Brian T Quinn; Bradford C Dickerson; Deborah Blacker; Randy L Buckner; Anders M Dale; R Paul Maguire; Bradley T Hyman; Marilyn S Albert; Ronald J Killiany
Journal:  Neuroimage       Date:  2006-03-10       Impact factor: 6.556

2.  Computing geodesic paths on manifolds.

Authors:  R Kimmel; J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

Review 3.  FreeSurfer.

Authors:  Bruce Fischl
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

4.  The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI methods.

Authors:  Clifford R Jack; Matt A Bernstein; Nick C Fox; Paul Thompson; Gene Alexander; Danielle Harvey; Bret Borowski; Paula J Britson; Jennifer L Whitwell; Chadwick Ward; Anders M Dale; Joel P Felmlee; Jeffrey L Gunter; Derek L G Hill; Ron Killiany; Norbert Schuff; Sabrina Fox-Bosetti; Chen Lin; Colin Studholme; Charles S DeCarli; Gunnar Krueger; Heidi A Ward; Gregory J Metzger; Katherine T Scott; Richard Mallozzi; Daniel Blezek; Joshua Levy; Josef P Debbins; Adam S Fleisher; Marilyn Albert; Robert Green; George Bartzokis; Gary Glover; John Mugler; Michael W Weiner
Journal:  J Magn Reson Imaging       Date:  2008-04       Impact factor: 4.813

5.  A multi-modal parcellation of human cerebral cortex.

Authors:  Timothy S Coalson; Emma C Robinson; Carl D Hacker; Matthew F Glasser; John Harwell; Essa Yacoub; Kamil Ugurbil; Jesper Andersson; Christian F Beckmann; Mark Jenkinson; Stephen M Smith; David C Van Essen
Journal:  Nature       Date:  2016-07-20       Impact factor: 49.962

6.  Early brain development in infants at high risk for autism spectrum disorder.

Authors:  Heather Cody Hazlett; Hongbin Gu; Brent C Munsell; Sun Hyung Kim; Martin Styner; Jason J Wolff; Jed T Elison; Meghan R Swanson; Hongtu Zhu; Kelly N Botteron; D Louis Collins; John N Constantino; Stephen R Dager; Annette M Estes; Alan C Evans; Vladimir S Fonov; Guido Gerig; Penelope Kostopoulos; Robert C McKinstry; Juhi Pandey; Sarah Paterson; John R Pruett; Robert T Schultz; Dennis W Shaw; Lonnie Zwaigenbaum; Joseph Piven
Journal:  Nature       Date:  2017-02-15       Impact factor: 49.962

  6 in total
  1 in total

Review 1.  Role of deep learning in infant brain MRI analysis.

Authors:  Mahmoud Mostapha; Martin Styner
Journal:  Magn Reson Imaging       Date:  2019-06-20       Impact factor: 2.546

  1 in total

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