Literature DB >> 30359698

Integrating data gap filling techniques: A case study predicting TEFs for neurotoxicity TEQs to facilitate the hazard assessment of polychlorinated biphenyls.

Prachi Pradeep1, Laura M Carlson2, Richard Judson3, Geniece M Lehmann2, Grace Patlewicz4.   

Abstract

The application of toxic equivalency factors (TEFs) or toxic units to estimate toxic potencies for mixtures of chemicals which contribute to a biological effect through a common mechanism is one approach for filling data gaps. Toxic Equivalents (TEQ) have been used to express the toxicity of dioxin-like compounds (i.e., dioxins, furans, and dioxin-like polychlorinated biphenyls (PCBs)) in terms of the most toxic form of dioxin: 2,3,7,8-tetrachlorodibenzo-p-dioxin (2,3,7,8-TCDD). This study sought to integrate two data gap filling techniques, quantitative structure-activity relationships (QSARs) and TEFs, to predict neurotoxicity TEQs for PCBs. Simon et al. (2007) previously derived neurotoxic equivalent (NEQ) values for a dataset of 87 PCB congeners, of which 83 congeners had experimental data. These data were taken from a set of four different studies measuring different effects related to neurotoxicity, each of which tested overlapping subsets of the 83 PCB congeners. The goals of the current study were to: (i) evaluate an alternative neurotoxic equivalent factor (NEF) derivations from an expanded dataset, relative to those derived by Simon et al. and (ii) develop QSAR models to provide NEF estimates for the large number of untested PCB congeners. The models used multiple linear regression, support vector regression, k-nearest neighbor and random forest algorithms within a 5-fold cross validation scheme and position-specific chlorine substitution patterns on the biphenyl scaffold as descriptors. Alternative NEF values were derived but the resulting QSAR models had relatively low predictivity (RMSE ∼0.24). This was mostly driven by the large uncertainties in the underlying data and NEF values. The derived NEFs and the QSAR predicted NEFs to fill data gaps should be applied with caution. Published by Elsevier Inc.

Entities:  

Keywords:  Neurotoxic equivalent factor (NEF); Neurotoxicity; PCB congeners; QSAR; Toxic equivalency factors (TEFs)

Mesh:

Substances:

Year:  2018        PMID: 30359698      PMCID: PMC6756469          DOI: 10.1016/j.yrtph.2018.10.013

Source DB:  PubMed          Journal:  Regul Toxicol Pharmacol        ISSN: 0273-2300            Impact factor:   3.271


  28 in total

Review 1.  A summary of the 209 PCB congener nomenclature.

Authors:  Snell A Mills; David I Thal; Jonathan Barney
Journal:  Chemosphere       Date:  2007-05-11       Impact factor: 7.086

2.  Neurotoxicity of polychlorinated biphenyls: structure-activity relationship of individual congeners.

Authors:  W Shain; B Bush; R Seegal
Journal:  Toxicol Appl Pharmacol       Date:  1991-10       Impact factor: 4.219

3.  Structure-activity relationship for noncoplanar polychlorinated biphenyl congeners toward the ryanodine receptor-Ca2+ channel complex type 1 (RyR1).

Authors:  Isaac N Pessah; Larry G Hansen; Timothy E Albertson; C Edwin Garner; Tram Anh Ta; Zung Do; Kyung Ho Kim; Patty W Wong
Journal:  Chem Res Toxicol       Date:  2006-01       Impact factor: 3.739

Review 4.  Using chemical categories to fill data gaps in hazard assessment.

Authors:  K van Leeuwen; T W Schultz; T Henry; B Diderich; G D Veith
Journal:  SAR QSAR Environ Res       Date:  2009       Impact factor: 3.000

Review 5.  The 2005 World Health Organization reevaluation of human and Mammalian toxic equivalency factors for dioxins and dioxin-like compounds.

Authors:  Martin Van den Berg; Linda S Birnbaum; Michael Denison; Mike De Vito; William Farland; Mark Feeley; Heidelore Fiedler; Helen Hakansson; Annika Hanberg; Laurie Haws; Martin Rose; Stephen Safe; Dieter Schrenk; Chiharu Tohyama; Angelika Tritscher; Jouko Tuomisto; Mats Tysklind; Nigel Walker; Richard E Peterson
Journal:  Toxicol Sci       Date:  2006-07-07       Impact factor: 4.849

6.  Quantitative structure-activity relationship (QSAR) studies for predicting activation of the ryanodine receptor type 1 channel complex (RyR1) by polychlorinated biphenyl (PCB) congeners.

Authors:  Sierra Rayne; Kaya Forest
Journal:  J Environ Sci Health A Tox Hazard Subst Environ Eng       Date:  2010       Impact factor: 2.269

7.  The effect of polychlorinated biphenyls on the high affinity uptake of the neurotransmitters, dopamine, serotonin, glutamate and GABA, into rat brain synaptosomes.

Authors:  E Mariussen; F Fonnum
Journal:  Toxicology       Date:  2001-02-21       Impact factor: 4.221

8.  Increased [3H]phorbol ester binding in rat cerebellar granule cells and inhibition of 45Ca(2+) buffering in rat cerebellum by hydroxylated polychlorinated biphenyls.

Authors:  Prasada Rao S Kodavanti; Thomas R Ward; Ethel C Derr-Yellin; James D McKinney; Hugh A Tilson
Journal:  Neurotoxicology       Date:  2003-03       Impact factor: 4.294

9.  Development of a neurotoxic equivalence scheme of relative potency for assessing the risk of PCB mixtures.

Authors:  Ted Simon; Janice K Britt; Robert C James
Journal:  Regul Toxicol Pharmacol       Date:  2007-03-31       Impact factor: 3.271

10.  Prediction of the health effects of polychlorinated biphenyls (PCBs) and their metabolites using quantitative structure-activity relationship (QSAR).

Authors:  P Ruiz; O Faroon; C J Moudgal; H Hansen; C T De Rosa; M Mumtaz
Journal:  Toxicol Lett       Date:  2008-07-10       Impact factor: 4.372

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  3 in total

1.  Polychlorinated Biphenyls in Food.

Authors:  Panithi Saktrakulkla; Tuo Lan; Jason Hua; Rachel F Marek; Peter S Thorne; Keri C Hornbuckle
Journal:  Environ Sci Technol       Date:  2020-09-03       Impact factor: 9.028

Review 2.  Practices and Trends of Machine Learning Application in Nanotoxicology.

Authors:  Irini Furxhi; Finbarr Murphy; Martin Mullins; Athanasios Arvanitis; Craig A Poland
Journal:  Nanomaterials (Basel)       Date:  2020-01-08       Impact factor: 5.076

3.  Non-dioxin-like polychlorinated biphenyl neurotoxic equivalents found in environmental and human samples.

Authors:  E B Holland; I N Pessah
Journal:  Regul Toxicol Pharmacol       Date:  2020-12-17       Impact factor: 3.271

  3 in total

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