Literature DB >> 30344454

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel Xeon Phi™.

Jeremias Gomes1, Alba C M A de Melo1, Jun Kong2, Tahsin Kurc3, Joel H Saltz3, George Teodoro1,3.   

Abstract

The Irregular Wavefront Propagation Pattern (IWPP) is a core computing structure in several image analysis operations. Efficient implementation of IWPP on the Intel Xeon Phi is difficult because of the irregular data access and computation characteristics. The traditional IWPP algorithm relies on atomic instructions, which are not available in the SIMD set of the Intel Phi. To overcome this limitation, we have proposed a new IWPP algorithm that can take advantage of non-atomic SIMD instructions supported on the Intel Xeon Phi. We have also developed and evaluated methods to use CPU and Intel Phi cooperatively for parallel execution of the IWPP algorithms. Our new cooperative IWPP version is also able to handle large out-of-core images that would not fit into the memory of the accelerator. The new IWPP algorithm is used to implement the Morphological Reconstruction and Fill Holes operations, which are operations commonly found in image analysis applications. The vectorization implemented with the new IWPP has attained improvements of up to about 5× on top of the original IWPP and significant gains as compared to state-of-the-art the CPU and GPU versions. The new version running on an Intel Phi is 6.21× and 3.14× faster than running on a 16-core CPU and on a GPU, respectively. Finally, the cooperative execution using two Intel Phi devices and a multi-core CPU has reached performance gains of 2.14× as compared to the execution using a single Intel Xeon Phi.

Entities:  

Keywords:  Fill Holes; IntelⓇ Xeon Phi™; Irregular Algorithm Propagation Pattern; Morphological Reconstruction

Year:  2018        PMID: 30344454      PMCID: PMC6195363          DOI: 10.1002/cpe.4425

Source DB:  PubMed          Journal:  Concurr Comput        ISSN: 1532-0626            Impact factor:   1.536


  7 in total

1.  Quantification of histochemical staining by color deconvolution.

Authors:  A C Ruifrok; D A Johnston
Journal:  Anal Quant Cytol Histol       Date:  2001-08       Impact factor: 0.302

2.  Morphological grayscale reconstruction in image analysis: applications and efficient algorithms.

Authors:  L Vincent
Journal:  IEEE Trans Image Process       Date:  1993       Impact factor: 10.856

3.  Region Templates: Data Representation and Management for High-Throughput Image Analysis.

Authors:  George Teodoro; Tony Pan; Tahsin Kurc; Jun Kong; Lee Cooper; Scott Klasky; Joel Saltz
Journal:  Parallel Comput       Date:  2014-12-01       Impact factor: 0.986

4.  An integrative approach for in silico glioma research.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; Fusheng Wang; Sharath R Cholleti; Tony C Pan; Patrick M Widener; Ashish Sharma; Tom Mikkelsen; Adam E Flanders; Daniel L Rubin; Erwin G Van Meir; Tahsin M Kurc; Carlos S Moreno; Daniel J Brat; Joel H Saltz
Journal:  IEEE Trans Biomed Eng       Date:  2010-07-23       Impact factor: 4.538

5.  Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines.

Authors:  George Teodoro; Tony Pan; Tahsin Kurc; Jun Kong; Lee Cooper; Joel Saltz
Journal:  Parallel Comput       Date:  2013-04-01       Impact factor: 0.986

6.  Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU: A Case Study from Microscopy Image Analysis.

Authors:  George Teodoro; Tahsin Kurc; Jun Kong; Lee Cooper; Joel Saltz
Journal:  IEEE Trans Parallel Distrib Syst       Date:  2014-05       Impact factor: 2.687

7.  Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates.

Authors:  Jun Kong; Lee A D Cooper; Fusheng Wang; Jingjing Gao; George Teodoro; Lisa Scarpace; Tom Mikkelsen; Matthew J Schniederjan; Carlos S Moreno; Joel H Saltz; Daniel J Brat
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.