Literature DB >> 30342764

Association of NIPA1 repeat expansions with amyotrophic lateral sclerosis in a large international cohort.

Gijs H P Tazelaar1, Annelot M Dekker1, Joke J F A van Vugt1, Rick A van der Spek1, Henk-Jan Westeneng1, Lindy J B G Kool1, Kevin P Kenna1, Wouter van Rheenen1, Sara L Pulit1, Russell L McLaughlin2, William Sproviero3, Alfredo Iacoangeli4, Annemarie Hübers5, David Brenner5, Karen E Morrison6, Pamela J Shaw7, Christopher E Shaw7, Monica Povedano Panadés8, Jesus S Mora Pardina9, Jonathan D Glass10, Orla Hardiman11, Ammar Al-Chalabi12, Philip van Damme13, Wim Robberecht13, John E Landers14, Albert C Ludolph5, Jochen H Weishaupt5, Leonard H van den Berg1, Jan H Veldink1, Michael A van Es15.   

Abstract

NIPA1 (nonimprinted in Prader-Willi/Angelman syndrome 1) mutations are known to cause hereditary spastic paraplegia type 6, a neurodegenerative disease that phenotypically overlaps to some extent with amyotrophic lateral sclerosis (ALS). Previously, a genomewide screen for copy number variants found an association with rare deletions in NIPA1 and ALS, and subsequent genetic analyses revealed that long (or expanded) polyalanine repeats in NIPA1 convey increased ALS susceptibility. We set out to perform a large-scale replication study to further investigate the role of NIPA1 polyalanine expansions with ALS, in which we characterized NIPA1 repeat size in an independent international cohort of 3955 patients with ALS and 2276 unaffected controls and combined our results with previous reports. Meta-analysis on a total of 6245 patients with ALS and 5051 controls showed an overall increased risk of ALS in those with expanded (>8) GCG repeat length (odds ratio = 1.50, p = 3.8×10-5). Together with previous reports, these findings provide evidence for an association of an expanded polyalanine repeat in NIPA1 and ALS.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amyotrophic lateral sclerosis; NIPA1; Repeat expansion

Mesh:

Substances:

Year:  2018        PMID: 30342764      PMCID: PMC7893598          DOI: 10.1016/j.neurobiolaging.2018.09.012

Source DB:  PubMed          Journal:  Neurobiol Aging        ISSN: 0197-4580            Impact factor:   4.673


  21 in total

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Authors:  Michael A van Es; Orla Hardiman; Adriano Chio; Ammar Al-Chalabi; R Jeroen Pasterkamp; Jan H Veldink; Leonard H van den Berg
Journal:  Lancet       Date:  2017-05-25       Impact factor: 79.321

2.  NIPA1 polyalanine repeat expansions are associated with amyotrophic lateral sclerosis.

Authors:  Hylke M Blauw; Wouter van Rheenen; Max Koppers; Philip Van Damme; Stefan Waibel; Robin Lemmens; Paul W J van Vught; Thomas Meyer; Claudia Schulte; Thomas Gasser; Edwin Cuppen; R Jeroen Pasterkamp; Wim Robberecht; Albert C Ludolph; Jan H Veldink; Leonard H van den Berg
Journal:  Hum Mol Genet       Date:  2012-02-28       Impact factor: 6.150

Review 3.  Clinical genetics of amyotrophic lateral sclerosis: what do we really know?

Authors:  Peter M Andersen; Ammar Al-Chalabi
Journal:  Nat Rev Neurol       Date:  2011-10-11       Impact factor: 42.937

Review 4.  Gene discovery in amyotrophic lateral sclerosis: implications for clinical management.

Authors:  Ammar Al-Chalabi; Leonard H van den Berg; Jan Veldink
Journal:  Nat Rev Neurol       Date:  2016-12-16       Impact factor: 42.937

5.  A large genome scan for rare CNVs in amyotrophic lateral sclerosis.

Authors:  Hylke M Blauw; Ammar Al-Chalabi; Peter M Andersen; Paul W J van Vught; Frank P Diekstra; Michael A van Es; Christiaan G J Saris; Ewout J N Groen; Wouter van Rheenen; Max Koppers; Ruben Van't Slot; Eric Strengman; Karol Estrada; Fernando Rivadeneira; Albert Hofman; Andre G Uitterlinden; Lambertus A Kiemeney; Sita H M Vermeulen; Anna Birve; Stefan Waibel; Thomas Meyer; Simon Cronin; Russell L McLaughlin; Orla Hardiman; Peter C Sapp; Martin D Tobin; Louise V Wain; Barbara Tomik; Agnieszka Slowik; Robin Lemmens; Dan Rujescu; Claudia Schulte; Thomas Gasser; Robert H Brown; John E Landers; Wim Robberecht; Albert C Ludolph; Roel A Ophoff; Jan H Veldink; Leonard H van den Berg
Journal:  Hum Mol Genet       Date:  2010-08-04       Impact factor: 6.150

6.  NIPA1 gene mutations cause autosomal dominant hereditary spastic paraplegia (SPG6).

Authors:  Shirley Rainier; Jing-Hua Chai; Debra Tokarz; Robert D Nicholls; John K Fink
Journal:  Am J Hum Genet       Date:  2003-09-23       Impact factor: 11.025

Review 7.  A comprehensive review of genetic association studies.

Authors:  Joel N Hirschhorn; Kirk Lohmueller; Edward Byrne; Kurt Hirschhorn
Journal:  Genet Med       Date:  2002 Mar-Apr       Impact factor: 8.822

8.  Detection of long repeat expansions from PCR-free whole-genome sequence data.

Authors:  Egor Dolzhenko; Joke J F A van Vugt; Richard J Shaw; Mitchell A Bekritsky; Marka van Blitterswijk; Giuseppe Narzisi; Subramanian S Ajay; Vani Rajan; Bryan R Lajoie; Nathan H Johnson; Zoya Kingsbury; Sean J Humphray; Raymond D Schellevis; William J Brands; Matt Baker; Rosa Rademakers; Maarten Kooyman; Gijs H P Tazelaar; Michael A van Es; Russell McLaughlin; William Sproviero; Aleksey Shatunov; Ashley Jones; Ahmad Al Khleifat; Alan Pittman; Sarah Morgan; Orla Hardiman; Ammar Al-Chalabi; Chris Shaw; Bradley Smith; Edmund J Neo; Karen Morrison; Pamela J Shaw; Catherine Reeves; Lara Winterkorn; Nancy S Wexler; David E Housman; Christopher W Ng; Alina L Li; Ryan J Taft; Leonard H van den Berg; David R Bentley; Jan H Veldink; Michael A Eberle
Journal:  Genome Res       Date:  2017-09-08       Impact factor: 9.438

9.  Ataxin-2 intermediate-length polyglutamine expansions are associated with increased risk for ALS.

Authors:  Andrew C Elden; Hyung-Jun Kim; Michael P Hart; Alice S Chen-Plotkin; Brian S Johnson; Xiaodong Fang; Maria Armakola; Felix Geser; Robert Greene; Min Min Lu; Arun Padmanabhan; Dana Clay-Falcone; Leo McCluskey; Lauren Elman; Denise Juhr; Peter J Gruber; Udo Rüb; Georg Auburger; John Q Trojanowski; Virginia M-Y Lee; Vivianna M Van Deerlin; Nancy M Bonini; Aaron D Gitler
Journal:  Nature       Date:  2010-08-26       Impact factor: 49.962

10.  Project MinE: study design and pilot analyses of a large-scale whole-genome sequencing study in amyotrophic lateral sclerosis.

Authors: 
Journal:  Eur J Hum Genet       Date:  2018-06-28       Impact factor: 4.246

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  9 in total

1.  Domain-Specific Cognitive Impairments in Humans and Flies With Reduced CYFIP1 Dosage.

Authors:  Young Jae Woo; Alexandros K Kanellopoulos; Parisa Hemati; Jill Kirschen; Rebecca A Nebel; Tao Wang; Claudia Bagni; Brett S Abrahams
Journal:  Biol Psychiatry       Date:  2019-04-17       Impact factor: 13.382

2.  Analysis of the GCG repeat length in NIPA1 gene in C9orf72-mediated ALS in a large Italian ALS cohort.

Authors:  Lucia Corrado; Maura Brunetti; Alice Di Pierro; Marco Barberis; Roberta Croce; Enrica Bersano; Fabiola De Marchi; Miriam Zuccalà; Nadia Barizzone; Andrea Calvo; Cristina Moglia; Letizia Mazzini; Adriano Chiò; Sandra D'Alfonso
Journal:  Neurol Sci       Date:  2019-07-09       Impact factor: 3.307

3.  Parent-of-Origin Effects in 15q11.2 BP1-BP2 Microdeletion (Burnside-Butler) Syndrome.

Authors:  Kyle W Davis; Moises Serrano; Sara Loddo; Catherine Robinson; Viola Alesi; Bruno Dallapiccola; Antonio Novelli; Merlin G Butler
Journal:  Int J Mol Sci       Date:  2019-03-22       Impact factor: 5.923

4.  C9orf72 intermediate expansions of 24-30 repeats are associated with ALS.

Authors:  Alfredo Iacoangeli; Ahmad Al Khleifat; Ashley R Jones; William Sproviero; Aleksey Shatunov; Sarah Opie-Martin; Karen E Morrison; Pamela J Shaw; Christopher E Shaw; Isabella Fogh; Richard J Dobson; Stephen J Newhouse; Ammar Al-Chalabi
Journal:  Acta Neuropathol Commun       Date:  2019-07-17       Impact factor: 7.801

5.  Clinical and Genetic Features of Chinese Patients With NIPA1-Related Hereditary Spastic Paraplegia Type 6.

Authors:  Jun Fu; Mingming Ma; Gang Li; Jiewen Zhang
Journal:  Front Genet       Date:  2022-04-08       Impact factor: 4.772

6.  A polymorphic transcriptional regulatory domain in the amyotrophic lateral sclerosis risk gene CFAP410 correlates with differential isoform expression.

Authors:  Jack N G Marshall; Alexander Fröhlich; Li Li; Abigail L Pfaff; Ben Middlehurst; Thomas P Spargo; Alfredo Iacoangeli; Bing Lang; Ammar Al-Chalabi; Sulev Koks; Vivien J Bubb; John P Quinn
Journal:  Front Mol Neurosci       Date:  2022-09-05       Impact factor: 6.261

7.  Repeats expansions in ATXN2, NOP56, NIPA1 and ATXN1 are not associated with ALS in Africans.

Authors:  Melissa Nel; Thandeka Mavundla; Kayleigh Gultig; Gerrit Botha; Nicola Mulder; Michael Benatar; Joanne Wuu; Anne Cooley; Jason Myers; Evadnie Rampersaud; Gang Wu; Jeannine M Heckmann
Journal:  IBRO Neurosci Rep       Date:  2021-02-10

8.  The GGC repeat expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy type 3.

Authors:  Jiaxi Yu; Jianwen Deng; Xueyu Guo; Jingli Shan; Xinghua Luan; Li Cao; Juan Zhao; Meng Yu; Wei Zhang; He Lv; Zhiying Xie; LingChao Meng; Yiming Zheng; Yawen Zhao; Qiang Gang; Qingqing Wang; Jing Liu; Min Zhu; Binbin Zhou; Pidong Li; Yinzhe Liu; Yang Wang; Chuanzhu Yan; Daojun Hong; Yun Yuan; Zhaoxia Wang
Journal:  Brain       Date:  2021-07-28       Impact factor: 13.501

9.  ALSgeneScanner: a pipeline for the analysis and interpretation of DNA sequencing data of ALS patients.

Authors:  Alfredo Iacoangeli; Ahmad Al Khleifat; William Sproviero; Aleksey Shatunov; Ashley R Jones; Sarah Opie-Martin; Ersilia Naselli; Simon D Topp; Isabella Fogh; Angela Hodges; Richard J Dobson; Stephen J Newhouse; Ammar Al-Chalabi
Journal:  Amyotroph Lateral Scler Frontotemporal Degener       Date:  2019-03-05       Impact factor: 4.092

  9 in total

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