Literature DB >> 30341550

A targeted sequencing approach to find novel pathogenic genes associated with sporadic aortic dissection.

Zongzhe Li1,2, Chengming Zhou1,2, Lun Tan1,2, Peng Chen1,2, Yanyan Cao1,2, Xianqing Li1,2, Jiangtao Yan1,2, Hesong Zeng1,2, Dao-Wu Wang3, Dao-Wen Wang4,5.   

Abstract

Aortic dissection (AD) is a heterogeneous genetic disease of the aorta with high mortality and poor prognosis. However, only few genetic causes of AD have been explored till date. After conducting a broad literature review focused on identifying potential pathogenic pathways, we designed a panel containing 152 AD-associated genes to conduct massively parallel targeted next-generation sequencing of 702 sporadic aortic dissection patients and 163 matched healthy controls. After validation by Sanger sequencing, we identified 21 definitely pathogenic and 635 likely pathogenic variants in 61.25% (430/702) of patients. In these patients, 34.88% (150/430) harbored more than one variant that was either definitely or likely to be pathogenic. Among the candidate genes, we identified 546 likely pathogenic variants in 47.72% (335/702) of patients. Importantly, we identified 94 loss-of-function (LOF) variants in 45 genes in AD patients, but only five LOF variants in the controls (P=1.34×10-4). With a burden test, we highlighted RNF213 as an important new gene for AD pathogenesis. We also performed transcriptome sequencing of human aorta tissues to evaluate the expression levels of these newly identified genes. Our study has compiled a comprehensive genetic map of sporadic AD in the Han Chinese population. We believe it will facilitate risk predicting and genetic diagnosis of this severe disease in the future.

Entities:  

Keywords:  aortic dissection; genetic diagnosis; next-generation sequencing

Mesh:

Substances:

Year:  2018        PMID: 30341550     DOI: 10.1007/s11427-018-9382-0

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   6.038


  5 in total

1.  Analysis of the contribution of 129 candidate genes to thoracic aortic aneurysm or dissection of a mixed cohort of sporadic and familial cases in South China.

Authors:  Ying Li; Miaoxian Fang; Jue Yang; Changjiang Yu; Juntao Kuang; Tucheng Sun; Ruixin Fan
Journal:  Am J Transl Res       Date:  2021-05-15       Impact factor: 4.060

2.  [Gene mutation analysis of 19 Uighur families with aortic disease in Kashgar, China].

Authors:  Changjiang Yu; Ying Li; Abuduresuli Adilijang; Jizhong Yan; Arkin Guzalnur; Abudula Abudushalamu; Yimamu Aimirela; Ruixin Fan
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2020-11-30

3.  Identification of COL3A1 variants associated with sporadic thoracic aortic dissection: a case-control study.

Authors:  Yanghui Chen; Yang Sun; Zongzhe Li; Chenze Li; Lei Xiao; Jiaqi Dai; Shiyang Li; Hao Liu; Dong Hu; Dongyang Wu; Senlin Hu; Bo Yu; Peng Chen; Ping Xu; Wei Kong; Dao Wen Wang
Journal:  Front Med       Date:  2021-05-28       Impact factor: 4.592

4.  Comparative analysis of aneurysm subtypes associated genes based on protein-protein interaction network.

Authors:  Ruya Sun; Yuan Zhou; Qinghua Cui
Journal:  BMC Bioinformatics       Date:  2021-12-11       Impact factor: 3.169

5.  RNF213-Associated Vascular Disease: A Concept Unifying Various Vasculopathies.

Authors:  Takahiro Hiraide; Hisato Suzuki; Mizuki Momoi; Yoshiki Shinya; Keiichi Fukuda; Kenjiro Kosaki; Masaharu Kataoka
Journal:  Life (Basel)       Date:  2022-04-08
  5 in total

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