Literature DB >> 30341173

Ca2+-mediated activation of the skeletal-muscle ryanodine receptor ion channel.

Le Xu1, Venkat R Chirasani1,2, Jordan S Carter3,4, Daniel A Pasek1, Nikolay V Dokholyan1,2, Naohiro Yamaguchi3,4, Gerhard Meissner5.   

Abstract

Cryo-electron micrograph studies recently have identified a Ca2+-binding site in the 2,200-kDa ryanodine receptor ion channel (RyR1) in skeletal muscle. To clarify the role of this site in regulating RyR1 activity, here we applied mutational, electrophysiological, and computational methods. Three amino acid residues that interact directly with Ca2+ were replaced, and these RyR1 variants were expressed in HEK293 cells. Single-site RyR1-E3893Q, -E3893V, -E3967Q, -E3967V, and -T5001A variants and double-site RyR1-E3893Q/E3967Q and -E3893V/E3967V variants displayed cellular Ca2+ release in response to caffeine, which indicated that they retained functionality as caffeine-sensitive, Ca2+-conducting channels in the HEK293 cell system. Using [3H]ryanodine binding and single-channel measurements of membrane isolates, we found that single- and double-site RyR1-E3893 and -E3967 variants are not activated by Ca2+ We also noted that RyR1-E3893Q/E3967Q and -E3893V/E3967V variants maintain caffeine- and ATP-induced activation and that RyR1-E3893Q/E3967Q is inhibited by Mg2+ and elevated Ca2+ RyR1-T5001A exhibited decreased Ca2+ sensitivity compared with WT-RyR1 in single-channel measurements. Computational methods suggested that electrostatic interactions between Ca2+ and negatively charged glutamate residues have a critical role in transducing the functional effects of Ca2+ on RyR1. We conclude that the removal of negative charges in the recently identified RyR1 Ca2+-binding site impairs RyR1 activation by physiological Ca2+ concentrations and results in loss of binding to Ca2+ or reduced Ca2+ affinity of the binding site.
© 2018 Xu et al.

Entities:  

Keywords:  Ca2+ activation; Ca2+ release channel; calcium homeostasis; computation; ion gating; mutagenesis; ryanodine receptor; sarcoplasmic reticulum (SR); skeletal muscle; structure-function analysis

Mesh:

Substances:

Year:  2018        PMID: 30341173      PMCID: PMC6302159          DOI: 10.1074/jbc.RA118.004453

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  36 in total

1.  Evidence for a role of C-terminal amino acid residues in skeletal muscle Ca2+ release channel (ryanodine receptor) function.

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2.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.

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3.  Role of amino-terminal half of the S4-S5 linker in type 1 ryanodine receptor (RyR1) channel gating.

Authors:  Takashi Murayama; Nagomi Kurebayashi; Toshiharu Oba; Hideto Oyamada; Katsuji Oguchi; Takashi Sakurai; Yasuo Ogawa
Journal:  J Biol Chem       Date:  2011-08-23       Impact factor: 5.157

4.  Functional calcium release channel formed by the carboxyl-terminal portion of ryanodine receptor.

Authors:  M B Bhat; J Zhao; H Takeshima; J Ma
Journal:  Biophys J       Date:  1997-09       Impact factor: 4.033

5.  G4941K substitution in the pore-lining S6 helix of the skeletal muscle ryanodine receptor increases RyR1 sensitivity to cytosolic and luminal Ca2.

Authors:  Le Xu; David D Mowrey; Venkat R Chirasani; Ying Wang; Daniel A Pasek; Nikolay V Dokholyan; Gerhard Meissner
Journal:  J Biol Chem       Date:  2017-12-18       Impact factor: 5.157

6.  Activation of the Ca2+ release channel of skeletal muscle sarcoplasmic reticulum by caffeine and related compounds.

Authors:  E Rousseau; J Ladine; Q Y Liu; G Meissner
Journal:  Arch Biochem Biophys       Date:  1988-11-15       Impact factor: 4.013

7.  Sarcoplasmic reticulum contains adenine nucleotide-activated calcium channels.

Authors:  J S Smith; R Coronado; G Meissner
Journal:  Nature       Date:  1985 Aug 1-7       Impact factor: 49.962

8.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

9.  Stabilization of the skeletal muscle ryanodine receptor ion channel-FKBP12 complex by the 1,4-benzothiazepine derivative S107.

Authors:  Yingwu Mei; Le Xu; Henning F Kramer; Ginger H Tomberlin; Claire Townsend; Gerhard Meissner
Journal:  PLoS One       Date:  2013-01-17       Impact factor: 3.240

10.  Coordinated movement of cytoplasmic and transmembrane domains of RyR1 upon gating.

Authors:  Montserrat Samsó; Wei Feng; Isaac N Pessah; P D Allen
Journal:  PLoS Biol       Date:  2009-04-14       Impact factor: 8.029

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  11 in total

1.  A central core disease mutation in the Ca2+-binding site of skeletal muscle ryanodine receptor impairs single-channel regulation.

Authors:  Venkat R Chirasani; Le Xu; Hannah G Addis; Daniel A Pasek; Nikolay V Dokholyan; Gerhard Meissner; Naohiro Yamaguchi
Journal:  Am J Physiol Cell Physiol       Date:  2019-06-05       Impact factor: 4.249

2.  Mapping co-regulatory interactions among ligand-binding sites in ryanodine receptor 1.

Authors:  Venkat R Chirasani; Konstantin I Popov; Gerhard Meissner; Nikolay V Dokholyan
Journal:  Proteins       Date:  2021-09-06

3.  Functional determination of calcium-binding sites required for the activation of inositol 1,4,5-trisphosphate receptors.

Authors:  Vikas Arige; Lara E Terry; Larry E Wagner; Sundeep Malik; Mariah R Baker; Guizhen Fan; Suresh K Joseph; Irina I Serysheva; David I Yule
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

4.  Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.

Authors:  Takuya Kobayashi; Akihisa Tsutsumi; Nagomi Kurebayashi; Kei Saito; Masami Kodama; Takashi Sakurai; Masahide Kikkawa; Takashi Murayama; Haruo Ogawa
Journal:  Nat Commun       Date:  2022-05-20       Impact factor: 17.694

Review 5.  Experimentally-driven protein structure modeling.

Authors:  Nikolay V Dokholyan
Journal:  J Proteomics       Date:  2020-04-05       Impact factor: 4.044

Review 6.  Preclinical model systems of ryanodine receptor 1-related myopathies and malignant hyperthermia: a comprehensive scoping review of works published 1990-2019.

Authors:  Tokunbor A Lawal; Emily S Wires; Nancy L Terry; James J Dowling; Joshua J Todd
Journal:  Orphanet J Rare Dis       Date:  2020-05-07       Impact factor: 4.123

7.  RyR1-related myopathy mutations in ATP and calcium binding sites impair channel regulation.

Authors:  Qi Yuan; Haikel Dridi; Oliver B Clarke; Steven Reiken; Zephan Melville; Anetta Wronska; Alexander Kushnir; Ran Zalk; Leah Sittenfeld; Andrew R Marks
Journal:  Acta Neuropathol Commun       Date:  2021-11-22       Impact factor: 7.801

8.  Structural basis for activation and gating of IP3 receptors.

Authors:  Emily A Schmitz; Hirohide Takahashi; Erkan Karakas
Journal:  Nat Commun       Date:  2022-03-17       Impact factor: 14.919

9.  Ca2+ inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM.

Authors:  Ashok R Nayak; Montserrat Samsó
Journal:  Elife       Date:  2022-03-08       Impact factor: 8.140

Review 10.  Regulatory mechanisms of ryanodine receptor/Ca2+ release channel revealed by recent advancements in structural studies.

Authors:  Haruo Ogawa; Nagomi Kurebayashi; Toshiko Yamazawa; Takashi Murayama
Journal:  J Muscle Res Cell Motil       Date:  2020-02-10       Impact factor: 2.698

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