Literature DB >> 30340123

Fold or not to fold upon binding - does it really matter?

Monika Fuxreiter1.   

Abstract

Protein interactions are usually determined by well-defined contact patterns. In this scenario, structuring of the interface is a prerequisite, which takes place prior or coupled to binding. Recent data, however, indicate plasticity of the templated folding pathway as well as considerable variations: polymorphism or dynamics in the bound-state. Conformational fluctuations in both cases are modulated by non-native, transient contacts, which complement suboptimal binding motifs to improve affinity. Here I discuss both templated folding and fuzzy binding mechanisms and propose a uniform scheme.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30340123     DOI: 10.1016/j.sbi.2018.09.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  29 in total

Review 1.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

Review 2.  Templated folding of intrinsically disordered proteins.

Authors:  Angelo Toto; Francesca Malagrinò; Lorenzo Visconti; Francesca Troilo; Livia Pagano; Maurizio Brunori; Per Jemth; Stefano Gianni
Journal:  J Biol Chem       Date:  2020-04-06       Impact factor: 5.157

Review 3.  Molecular recognition of nucleosomes by binding partners.

Authors:  Seyit Kale; Alexander Goncearenco; Yaroslav Markov; David Landsman; Anna R Panchenko
Journal:  Curr Opin Struct Biol       Date:  2019-04-13       Impact factor: 6.809

4.  The free energy folding penalty accompanying binding of intrinsically disordered α-helical motifs.

Authors:  San Hadži; Jurij Lah
Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

Review 5.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

6.  Intrinsically Disordered Transactivation Domains Bind to TAZ1 Domain of CBP via Diverse Mechanisms.

Authors:  Meng Gao; Jing Yang; Sen Liu; Zhengding Su; Yongqi Huang
Journal:  Biophys J       Date:  2019-08-29       Impact factor: 4.033

7.  The sequence-ensemble relationship in fuzzy protein complexes.

Authors:  San Hadži; Remy Loris; Jurij Lah
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 11.205

8.  Intrinsically Disordered Bacterial Polar Organizing Protein Z, PopZ, Interacts with Protein Binding Partners Through an N-terminal Molecular Recognition Feature.

Authors:  Christopher T Nordyke; Yasin M Ahmed; Ryan Z Puterbaugh; Grant R Bowman; Krisztina Varga
Journal:  J Mol Biol       Date:  2020-10-12       Impact factor: 6.151

Review 9.  Understanding the Binding Induced Folding of Intrinsically Disordered Proteins by Protein Engineering: Caveats and Pitfalls.

Authors:  Francesca Malagrinò; Lorenzo Visconti; Livia Pagano; Angelo Toto; Francesca Troilo; Stefano Gianni
Journal:  Int J Mol Sci       Date:  2020-05-15       Impact factor: 5.923

10.  Rapid Biophysical Characterization and NMR Spectroscopy Structural Analysis of Small Proteins from Bacteria and Archaea.

Authors:  Nina Kubatova; Dennis J Pyper; Hendrik R A Jonker; Krishna Saxena; Laura Remmel; Christian Richter; Sabine Brantl; Elena Evguenieva-Hackenberg; Wolfgang R Hess; Gabriele Klug; Anita Marchfelder; Jörg Soppa; Wolfgang Streit; Maxim Mayzel; Vladislav Y Orekhov; Monika Fuxreiter; Ruth A Schmitz; Harald Schwalbe
Journal:  Chembiochem       Date:  2020-01-21       Impact factor: 3.164

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