Literature DB >> 30339965

Unravelling molecular complexity in structural cell biology.

Stefan Pfeffer1, Julia Mahamid2.   

Abstract

Structural and cell biology have traditionally been separate disciplines and employed techniques that were well defined within the realm of either one or the other. Recent technological breakthroughs propelled electron microscopy of frozen hydrated specimens (cryo-EM) followed by single-particle analysis (SPA) to become a widely applied approach for obtaining near-atomic resolution structures of purified macromolecules. In parallel, ongoing developments on sample preparation are increasingly successful in bringing molecular views into cell biology. Cryo-electron tomography (cryo-ET) has so far served as the main imaging modality employed in these efforts towards obtaining three-dimensional (3D) volumes of heterogeneous molecular assemblies. We review the state-of-the-art in cryo-ET and computational processing and describe the current opportunities and frontiers for in-cell applications.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30339965     DOI: 10.1016/j.sbi.2018.08.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  15 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 2.  Broadening access to cryoEM through centralized facilities.

Authors:  Christina M Zimanyi; Mykhailo Kopylov; Clinton S Potter; Bridget Carragher; Edward T Eng
Journal:  Trends Biochem Sci       Date:  2022-02       Impact factor: 13.807

3.  Collision-Induced Unfolding Studies of Proteins and Protein Complexes using Drift Tube Ion Mobility-Mass Spectrometer.

Authors:  Xueyun Zheng; Ruwan T Kurulugama; Arthur Laganowsky; David H Russell
Journal:  Anal Chem       Date:  2020-05-08       Impact factor: 6.986

4.  Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells.

Authors:  David P Hoffman; Gleb Shtengel; C Shan Xu; Kirby R Campbell; Melanie Freeman; Lei Wang; Daniel E Milkie; H Amalia Pasolli; Nirmala Iyer; John A Bogovic; Daniel R Stabley; Abbas Shirinifard; Song Pang; David Peale; Kathy Schaefer; Wim Pomp; Chi-Lun Chang; Jennifer Lippincott-Schwartz; Tom Kirchhausen; David J Solecki; Eric Betzig; Harald F Hess
Journal:  Science       Date:  2020-01-17       Impact factor: 47.728

5.  A modular platform for automated cryo-FIB workflows.

Authors:  Sven Klumpe; Herman Kh Fung; Sara K Goetz; Ievgeniia Zagoriy; Bernhard Hampoelz; Xiaojie Zhang; Philipp S Erdmann; Janina Baumbach; Christoph W Müller; Martin Beck; Jürgen M Plitzko; Julia Mahamid
Journal:  Elife       Date:  2021-12-24       Impact factor: 8.140

6.  A collection of yeast cellular electron cryotomography data.

Authors:  Lu Gan; Cai Tong Ng; Chen Chen; Shujun Cai
Journal:  Gigascience       Date:  2019-06-01       Impact factor: 6.524

7.  Structural analysis of biological targets by host:guest crystal lattice engineering.

Authors:  Patrick Ernst; Andreas Plückthun; Peer R E Mittl
Journal:  Sci Rep       Date:  2019-10-23       Impact factor: 4.379

Review 8.  The Cuprizone Model: Dos and Do Nots.

Authors:  Jiangshan Zhan; Teresa Mann; Sarah Joost; Newshan Behrangi; Marcus Frank; Markus Kipp
Journal:  Cells       Date:  2020-03-31       Impact factor: 6.600

9.  Liquid-crystalline phase transitions in lipid droplets are related to cellular states and specific organelle association.

Authors:  Julia Mahamid; Dimitry Tegunov; Andreas Maiser; Jan Arnold; Heinrich Leonhardt; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-02       Impact factor: 11.205

Review 10.  Stereocilia Rootlets: Actin-Based Structures That Are Essential for Structural Stability of the Hair Bundle.

Authors:  Itallia Pacentine; Paroma Chatterjee; Peter G Barr-Gillespie
Journal:  Int J Mol Sci       Date:  2020-01-03       Impact factor: 5.923

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