Literature DB >> 30333694

Planar morphometrics using Teichmüller maps.

Gary P T Choi1, L Mahadevan1,2,3.   

Abstract

Inspired by the question of quantifying wing shape, we propose a computational approach for analysing planar shapes. We first establish a correspondence between the boundaries of two planar shapes with boundary landmarks using geometric functional data analysis and then compute a landmark-matching curvature-guided Teichmüller mapping with uniform quasi-conformal distortion in the bulk. This allows us to analyse the pair-wise difference between the planar shapes and construct a similarity matrix on which we deploy methods from network analysis to cluster shapes. We deploy our method to study a variety of Drosophila wings across species to highlight the phenotypic variation between them, and Lepidoptera wings over time to study the developmental progression of wings. Our approach of combining complex analysis, computation and statistics to quantify, compare and classify planar shapes may be usefully deployed in other biological and physical systems.

Entities:  

Keywords:  Teichmüller maps; communitydetection; geometric morphometrics; shape classification

Year:  2018        PMID: 30333694      PMCID: PMC6189586          DOI: 10.1098/rspa.2017.0905

Source DB:  PubMed          Journal:  Proc Math Phys Eng Sci        ISSN: 1364-5021            Impact factor:   2.704


  13 in total

1.  Geographic variation for wing shape in Drosophila serrata.

Authors:  Ary A Hoffmann; Jennifer Shirriffs
Journal:  Evolution       Date:  2002-05       Impact factor: 3.694

Review 2.  Patterns on the insect wing.

Authors:  Ronald J Parchem; Michael W Perry; Nipam H Patel
Journal:  Curr Opin Genet Dev       Date:  2007-07-12       Impact factor: 5.578

3.  Deformable templates using large deformation kinematics.

Authors:  G E Christensen; R D Rabbitt; M I Miller
Journal:  IEEE Trans Image Process       Date:  1996       Impact factor: 10.856

4.  Landmark matching via large deformation diffeomorphisms.

Authors:  S C Joshi; M I Miller
Journal:  IEEE Trans Image Process       Date:  2000       Impact factor: 10.856

5.  Plasticity, canalization, and developmental stability of the Drosophila wing: joint effects of mutations and developmental temperature.

Authors:  Vincent Debat; Allan Debelle; Ian Dworkin
Journal:  Evolution       Date:  2009-07-16       Impact factor: 3.694

6.  The development of wing shape in Lepidoptera: mitotic density, not orientation, is the primary determinant of shape.

Authors:  H Frederik Nijhout; Margaret Cinderella; Laura W Grunert
Journal:  Evol Dev       Date:  2014-03       Impact factor: 1.930

7.  Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila.

Authors:  James Bonacum; Patrick M O'Grady; Michael Kambysellis; Rob Desalle
Journal:  Mol Phylogenet Evol       Date:  2005-04-26       Impact factor: 4.286

8.  Leaf growth is conformal.

Authors:  Karen Alim; Shahaf Armon; Boris I Shraiman; Arezki Boudaoud
Journal:  Phys Biol       Date:  2016-09-06       Impact factor: 2.583

9.  A database of wing diversity in the Hawaiian Drosophila.

Authors:  Kevin A Edwards; Linden T Doescher; Kenneth Y Kaneshiro; Daisuke Yamamoto
Journal:  PLoS One       Date:  2007-05-30       Impact factor: 3.240

10.  Discovering communities through friendship.

Authors:  Greg Morrison; L Mahadevan
Journal:  PLoS One       Date:  2012-07-20       Impact factor: 3.240

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  2 in total

1.  Automated Nuclear Cartography Reveals Conserved Sperm Chromosome Territory Localization across 2 Million Years of Mouse Evolution.

Authors:  Benjamin Matthew Skinner; Joanne Bacon; Claudia Cattoni Rathje; Erica Lee Larson; Emily Emiko Konishi Kopania; Jeffrey Martin Good; Nabeel Ahmed Affara; Peter James Ivor Ellis
Journal:  Genes (Basel)       Date:  2019-02-01       Impact factor: 4.096

2.  Global constraints within the developmental program of the Drosophila wing.

Authors:  Vasyl Alba; James E Carthew; Richard W Carthew; Madhav Mani
Journal:  Elife       Date:  2021-06-28       Impact factor: 8.140

  2 in total

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