Literature DB >> 30329081

Connecting the dots between computational tools to analyse soil-root water relations.

Sixtine Passot1, Valentin Couvreur1, Félicien Meunier1,2,3, Xavier Draye1, Mathieu Javaux1,4, Daniel Leitner5, Loïc Pagès6, Andrea Schnepf4, Jan Vanderborght4, Guillaume Lobet1,4.   

Abstract

In recent years, many computational tools, such as image analysis, data management, process-based simulation, and upscaling tools, have been developed to help quantify and understand water flow in the soil-root system, at multiple scales (tissue, organ, plant, and population). Several of these tools work together or at least are compatible. However, for the uninformed researcher, they might seem disconnected, forming an unclear and disorganized succession of tools. In this article, we show how different studies can be further developed by connecting them to analyse soil-root water relations in a comprehensive and structured network. This 'explicit network of soil-root computational tools' informs readers about existing tools and helps them understand how their data (past and future) might fit within the network. We also demonstrate the novel possibilities of scale-consistent parameterizations made possible by the network with a set of case studies from the literature. Finally, we discuss existing gaps in the network and how we can move forward to fill them.
© The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Computational tools; image analysis; network; root; simulation; soil; water

Mesh:

Substances:

Year:  2019        PMID: 30329081     DOI: 10.1093/jxb/ery361

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  3 in total

1.  Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake.

Authors:  Andrea Schnepf; Christopher K Black; Valentin Couvreur; Benjamin M Delory; Claude Doussan; Axelle Koch; Timo Koch; Mathieu Javaux; Magdalena Landl; Daniel Leitner; Guillaume Lobet; Trung Hieu Mai; Félicien Meunier; Lukas Petrich; Johannes A Postma; Eckart Priesack; Volker Schmidt; Jan Vanderborght; Harry Vereecken; Matthias Weber
Journal:  Front Plant Sci       Date:  2020-03-31       Impact factor: 5.753

2.  GRANAR, a Computational Tool to Better Understand the Functional Importance of Monocotyledon Root Anatomy.

Authors:  Adrien Heymans; Valentin Couvreur; Therese LaRue; Ana Paez-Garcia; Guillaume Lobet
Journal:  Plant Physiol       Date:  2019-11-19       Impact factor: 8.340

3.  Functional-structural root-system model validation using a soil MRI experiment.

Authors:  Axelle Koch; Félicien Meunier; Jan Vanderborght; Sarah Garré; Andreas Pohlmeier; Mathieu Javaux
Journal:  J Exp Bot       Date:  2019-05-09       Impact factor: 6.992

  3 in total

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