Literature DB >> 30321397

Application of Benchmark Concentration (BMC) Analysis on Zebrafish Data: A New Perspective for Quantifying Toxicity in Alternative Animal Models.

Jui-Hua Hsieh1, Kristen Ryan2, Alexander Sedykh3, Ja-An Lin4, Andrew J Shapiro2, Frederick Parham2, Mamta Behl2.   

Abstract

Over the past decade, the zebrafish is increasingly being used as a model to screen for chemical-mediated toxicities including developmental toxicity (DT) and neurotoxicity (NT). One of the major challenges is lack of harmonization in data analysis approaches, thereby posing difficulty in comparing findings across laboratories. To address this, we sought to establish a unified data analysis strategy for both DT and NT data, by adopting the benchmark concentration (BMC) analysis. There are two critical aspects in the BMC analysis: having a toxicity endpoint amenable for BMC and selecting a proper benchmark response (BMR) for the endpoint. For the former, in addition to the typical endpoints in NT assay (eg, hyper/hypo- response quantified by distance moved), we also used endpoints that assess the differences in movement patterns between chemical-treated embryos and control embryos. For the latter, we standardized the selection of BMR, which is analogous to minimum activity threshold, based on intrinsic response variations in the endpoint. When comparing our BMC results with a traditionally used LOAEL method (lowest-observed-adverse-effect level), we found high active compound concordance (100% for DT vs 74% for NT); generally, the BMC was more sensitive than LOAEL (no. of BMC more sensitive/no. of concordant active compounds, 43/50 for DT vs 16/26 for NT). Using the BMC with standardized toxicity endpoints and an appropriate BMR, we may now have a unified data-analysis approach to comparing results across different zebrafish datasets, for a better understanding of strengths and challenges when using the zebrafish as a screening tool.

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Year:  2019        PMID: 30321397      PMCID: PMC6317423          DOI: 10.1093/toxsci/kfy258

Source DB:  PubMed          Journal:  Toxicol Sci        ISSN: 1096-0929            Impact factor:   4.849


  33 in total

1.  Feasibility study of the zebrafish assay as an alternative method to screen for developmental toxicity and embryotoxicity using a training set of 27 compounds.

Authors:  Ingrid W T Selderslaghs; Ronny Blust; Hilda E Witters
Journal:  Reprod Toxicol       Date:  2011-08-17       Impact factor: 3.143

Review 2.  Developmental toxicity screening in zebrafish.

Authors:  Catherine W McCollum; Nicole A Ducharme; Maria Bondesson; Jan-Ake Gustafsson
Journal:  Birth Defects Res C Embryo Today       Date:  2011-06

3.  Brominated and organophosphorus flame retardants in body wipes and house dust, and an estimation of house dust hand-loadings in Dutch toddlers.

Authors:  Eva J Sugeng; Pim E G Leonards; Margot van de Bor
Journal:  Environ Res       Date:  2017-07-27       Impact factor: 6.498

4.  CurveP Method for Rendering High-Throughput Screening Dose-Response Data into Digital Fingerprints.

Authors:  Alexander Sedykh
Journal:  Methods Mol Biol       Date:  2016

5.  Acute and developmental behavioral effects of flame retardants and related chemicals in zebrafish.

Authors:  Kimberly A Jarema; Deborah L Hunter; Rachel M Shaffer; Mamta Behl; Stephanie Padilla
Journal:  Neurotoxicol Teratol       Date:  2015-09-05       Impact factor: 3.763

Review 6.  Making Waves: New Developments in Toxicology With the Zebrafish.

Authors:  Katharine A Horzmann; Jennifer L Freeman
Journal:  Toxicol Sci       Date:  2018-05-01       Impact factor: 4.849

7.  Use of in vitro HTS-derived concentration-response data as biological descriptors improves the accuracy of QSAR models of in vivo toxicity.

Authors:  Alexander Sedykh; Hao Zhu; Hao Tang; Liying Zhang; Ann Richard; Ivan Rusyn; Alexander Tropsha
Journal:  Environ Health Perspect       Date:  2010-10-27       Impact factor: 9.031

8.  Development and validation of an automated high-throughput system for zebrafish in vivo screenings.

Authors:  Ainhoa Letamendia; Celia Quevedo; Izaskun Ibarbia; Juan M Virto; Olaia Holgado; Maria Diez; Juan Carlos Izpisua Belmonte; Carles Callol-Massot
Journal:  PLoS One       Date:  2012-05-15       Impact factor: 3.240

9.  Zebrafish behavioral profiling identifies multitarget antipsychotic-like compounds.

Authors:  Giancarlo Bruni; Andrew J Rennekamp; Andrea Velenich; Matthew McCarroll; Leo Gendelev; Ethan Fertsch; Jack Taylor; Parth Lakhani; Dennis Lensen; Tama Evron; Paul J Lorello; Xi-Ping Huang; Sabine Kolczewski; Galen Carey; Barbara J Caldarone; Eric Prinssen; Bryan L Roth; Michael J Keiser; Randall T Peterson; David Kokel
Journal:  Nat Chem Biol       Date:  2016-05-30       Impact factor: 15.040

10.  Advancing toxicology research using in vivo high throughput toxicology with small fish models.

Authors:  Antonio Planchart; Carolyn J Mattingly; David Allen; Patricia Ceger; Warren Casey; David Hinton; Jyotshna Kanungo; Seth W Kullman; Tamara Tal; Maria Bondesson; Shawn M Burgess; Con Sullivan; Carol Kim; Mamta Behl; Stephanie Padilla; David M Reif; Robert L Tanguay; Jon Hamm
Journal:  ALTEX       Date:  2016-06-21       Impact factor: 6.043

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  5 in total

1.  Detection and Prioritization of Developmentally Neurotoxic and/or Neurotoxic Compounds Using Zebrafish.

Authors:  Celia Quevedo; Mamta Behl; Kristen Ryan; Richard S Paules; Aintzane Alday; Arantza Muriana; Ainhoa Alzualde
Journal:  Toxicol Sci       Date:  2019-03-01       Impact factor: 4.849

2.  Accounting for Artifacts in High-Throughput Toxicity Assays.

Authors:  Jui-Hua Hsieh
Journal:  Methods Mol Biol       Date:  2022

3.  Developmental Neurotoxicity and Behavioral Screening in Larval Zebrafish with a Comparison to Other Published Results.

Authors:  Kimberly A Jarema; Deborah L Hunter; Bridgett N Hill; Jeanene K Olin; Katy N Britton; Matthew R Waalkes; Stephanie Padilla
Journal:  Toxics       Date:  2022-05-17

Review 4.  Use of Zebrafish in Drug Discovery Toxicology.

Authors:  Steven Cassar; Isaac Adatto; Jennifer L Freeman; Joshua T Gamse; Iñaki Iturria; Christian Lawrence; Arantza Muriana; Randall T Peterson; Steven Van Cruchten; Leonard I Zon
Journal:  Chem Res Toxicol       Date:  2019-11-16       Impact factor: 3.739

5.  Differences in neurotoxic outcomes of organophosphorus pesticides revealed via multi-dimensional screening in adult and regenerating planarians.

Authors:  Danielle Ireland; Siqi Zhang; Veronica Bochenek; Jui-Hua Hsieh; Christina Rabeler; Zane Meyer; Eva-Maria S Collins
Journal:  Front Toxicol       Date:  2022-10-04
  5 in total

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