| Literature DB >> 30320072 |
Adolfo Horn1, Daniel Englert2,3, Asha E Roberts2, Peter Comba2, Gerhard Schenk3, Elizabeth H Krenske3, Lawrence R Gahan3.
Abstract
A dinickel(II) complex of the ligand 1,3-bis(bis(pyridin-2-ylmethyl)amino)propan-2-ol (HL1) has been prepared and characterized to generate a functional model for nickel(II) phosphoesterase enzymes. The complex, [Ni2(L1)(μ-OAc)(H2O)2](ClO4)2·H2O, was characterized by microanalysis, X-ray crystallography, UV-visible, and IR absorption spectroscopy and solid state magnetic susceptibility measurements. Susceptibility studies show that the complex is antiferromagnetically coupled with the best fit parameters J = -27.4 cm-1, g = 2.29, D = 28.4 cm-1, comparable to corresponding values measured for the analogous dicobalt(II) complex [Co2(L1)(μ-OAc)](ClO4)2·0.5 H2O (J = -14.9 cm-1 and g = 2.16). Catalytic measurements with the diNi(II) complex using the substrate bis(2,4-dinitrophenyl)phosphate (BDNPP) demonstrated activity toward hydrolysis of the phosphoester substrate with K m ~10 mM, and k cat ~0.025 s-1. The combination of structural and catalytic studies suggests that the likely mechanism involves a nucleophilic attack on the substrate by a terminal nucleophilic hydroxido moiety.Entities:
Keywords: DFT; kinetics; magnetism; mechanism; nickel; phosphoesterase
Year: 2018 PMID: 30320072 PMCID: PMC6168013 DOI: 10.3389/fchem.2018.00441
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Figure 1(A) 1,3-bis(bis(pyridin-2-ylmethyl)amino)propan-2-ol (HL1); (B) N,N,N',N'-tetrakis[(6-methyl-2-pyridyl)methyl]-1,3-diaminopropan-2-ol (Me4tpdpH).
Crystallographic data for [Ni2(L1)(μ-OAc)(H2O)2](ClO4)2·H2O.
| Empirical formula | C29H36Cl2N6Ni2O13 |
| Formula weight | 864.96 |
| Wavelength (Å) | 0.71073 (Mo Kα) |
| Crystal system | Monoclinic |
| Space group | C 2/c |
| 12.7975(10) | |
| 21.0734(13) | |
| 13.8612(8) | |
| α (°) | 90 |
| β (°) | 105.169(7) |
| γ (°) | 90 |
| Vol (Å3) | 3,607.9(4) |
| Z | 4 |
| μ (mm−1) | 1.263 |
| 1,784 | |
| ρ (Mg/m3) | 1.592 |
| Reflns col. | 8510 |
| Ind. Reflns ( | 3,178(0.0533) |
| θ range (°) | 3.48 to 25.00 |
| GOOF on F2 | 1.042 |
| final R indices [I>2σ(I)] | R1 = 0.0523, wR2 = 0.1171 |
| R indices (all data) | R1 = 0.0733, wR2 = 0.1312 |
Selected bond lengths (Å) and angles (°) for [Ni2(L1)(μ-OAc)(H2O)2](ClO4)2·H2O.
| N(1)-Ni(1) 2.078(3) | N(2)-Ni(1) 2.110(4) | N(3)-Ni(1) 2.080(4) |
| O(1)-Ni(1) 1.990(2) | O(2)-Ni(1) 2.058(3) | O(3)-Ni(1) 2.132(3) |
| Ni(1)-O(1)-Ni(1) 131.6(2) | O(1)-Ni(1)-O2 93.57(13) | O(1)-Ni(1)-N(1) 96.25(10) |
| O(2)-Ni(1)-N(1) 97.99(13) | O(1)-Ni(1)-N(3) 92.40(10) | O(2)-Ni(1)-N(3) 99.49(13) |
| N(1)-Ni(1)-N(3) 159.95(14) | O(1)-Ni(1)-N(2) 83.55(14) | O(2)-Ni(1)-N(2) 176.71(13) |
| N(1)-Ni(1)-N(2) 80.79(14) | N(3)-Ni(1)-N(2) 82.26(14) | O(1)-Ni(1)-O(3) 176.18(12) |
| O(2)-Ni(1)-O(3) 89.54(12) | N(1)-Ni(1)-O(3) 85.50(13) | N(3)-Ni(1)-O(3) 84.89(12) |
| N(2)-Ni(1)-O(3) 93.40(13) | ||
Figure 2ORTEP plot of the cation [Ni2(L1)( μ-OAc)(H2O)2]2+. Counter ions and hydrogen atoms have been omitted for clarity (25% ellipsoid probability in ORTEP plot).
Figure 3Cations of (Top) [Ni2L1(μ-OAc)2]+ (Moffat et al., 2014), and (Bottom) [Ni2(Me4tpdp)(μ-OAc)(ClO4)(CH3OH)]+ from the X-ray structures (Yamaguchi et al., 1997, 2001).
Figure 4χ vs. T, and χT vs. T (insert) plots for [Ni2(L1)(μ-OAc)(H2O)2](ClO4)2·H2O.
Figure 5χ vs. T, and χT vs. T (insert) plots for [Co2(L1)(μ-OAc)](ClO4)2·0.5H2O.
Figure 6(A) pH dependence profile, and (B) Michaelis-Menten plot for the hydrolysis of BDNPP catalyzed by [Ni2(L1)(μ-OAc)(H2O)2](ClO4)2·H2O.
Michaelis Menten kinetic data of dinuclear Ni(II) complexes that mimic metallophosphatases.
| 2-[(4,7-diisopropyl-1,4,7-triazonan-1-yl)methyl]-4-methyl-6-[(pyridine-2-ylmethylamino)methyl]phenol (HL) ( | [Ni2(L)(μ-OAc)2(OH2)](BPh4).H2O | BDNPP | Acetonitrile/aqueous buffer | 0.013 (pH 9) | 3.44 | Xavier and Neves, |
| 2,6-bis[bis(2-pyridylmethyl)aminomethyl]-4-chlorophenol (HLClO) ( | [Ni2(LClO)(μ-OAc)2](PF6).3H2O | BDNPP | Acetonitrile/aqueous buffer | 2.80 × 10−3 (pH 7) 0.065 (pH 10.5) | 0.21 (pH 7) 2.18 (pH 10.5) | Massoud et al., |
| 2-[(N-benzyl-N-2-pyridylmethylamine)]-4-methyl-6-[N-(2-pyridylmethyl)aminomethyl)])-4-methyl-6-formylphenol) (H2BPPAMFF) ( | [Ni2(HBPPAMFF)(μ-OAc)2(H2O)](BPh4) | BDNPP | Acetonitrile/aqueous buffer | 0.054 (pH 9) | 1.57 | Piovezan et al., |
| 2-[N-(2-(pyridyl-2-yl)ethyl)(1-methylimidazol-2-yl)aminomethyl]-4-methyl-6-[N-(2-(imidazol-4-yl)ethyl)aminomethyl]phenol (HL2) ( | [Ni2(L2) (μ-OAc)2(CH3CN)](BPh4) | BDNPP | Acetonitrile/aqueous buffer | 0.034 (pH 9) | 1.19 | Greatti et al., |
| 2-[N-bis-(2-pyridylmethyl)aminomethyl]-4-methyl-6-[N-(2-pyridylmethyl)aminomethyl] phenol (HLA1) ( | [Ni2(LA1) (μ-OAc)2(H2O)]ClO4.H2O | BDNPP | Acetonitrile/aqueous buffer | 0.386 (pH 9) | 5.67 | Greatti et al., |
| 1,3-bis(bis(pyridin-2-ylmethyl)amino)propan-2-ol (HL1) | [Ni2L1(μ-OAc)(H2O)2](ClO4)2·H2O | BDNPP | Acetonitrile/aqueous buffer | ~0.025 (pH 11) | 10 | This work |
| N-4-methyl-homopiperazine-N'-[N-(2-pyridylmethyl)-N-2-(2-pyridylethylamine]-1,3-diaminopropan-2-ol (HL) ( | [Ni2(L)(OH)]2+ | BNPP | Aqueous buffer | 7.4 × 10−5 (pH 8.4) | 6.95 | Wu and Wang, |
| 2-[[(2-piperidylmethyl)amino]methyl]-4-bromo-6-[(1-methylhomopiperazine-4-yl)methyl]phenol (HL) ( | [Ni2(L)(OH)]2+ | BNPP | Ethanol/aqueous buffer | 1.49 × 10−4 (pH 8.3) | 7.25 | Ren et al., |
| N,N,N',N'-tetrakis[(6-methyl-2-pyridyl)methyl]-1,3-diaminopropan-2-ol (Me4tpdpH) ( | [Ni2(Me4tpdp) (μ-OAc)2(H2O)] (ClO4) | BNP | Acetonitrile/aqueous buffer | kBNP = 3.4 × 10−2 M−1 s−1 | Yamaguchi et al., |
The numbers refer to the ligands shown in Scheme .
Scheme 1The ligands listed in Table 3.
Figure 7After loss of the μ-acetato ligands in the complex [Ni2(L1)(μ-OAc)(H2O)2] 2+ these structures represent (A) μ-1,3 coordination of BDNPP− to the two Ni(II) sites with two aqua ligands positioned trans to the μ-alkoxo moiety; and (B) monodentate coordination of BDNPP- with a OH/H2O ligand occupying the vacant site on the second Ni(II) and poised as the intramolecular terminal nucleophile. Structures generated from DFT calculations.
Figure 8Proposed mechanism of reaction between [Ni2(L1)(μ-OAc)(H2O)2]2+ and BDNPP− adapted from (Vichard and Kaden, 2004). The proposed mechanism resembles that of the lower pH mechanism proposed by Massoud et al. (2016).