| Literature DB >> 30319793 |
Shu Yamazaki1, Kazuki Nishiyama1, Shiomi Yagi1, Tomoyuki Haraguchi1, Takashiro Akitsu1.
Abstract
The title compound, C10H10O4, was synthesized from tetra-methyl-1,4-benzo-quinone. In the crystal, the almost planar mol-ecule (r.m.s. deviation = 0.024 Å) forms intra-molecular hydrogen bonds between the aldehyde and hy-droxy groups and exhibits C 2v symmetry. This achiral mol-ecule crystallizes in the chiral space group P21 with inter-molecular O-H⋯O and C-H⋯O hydrogen bonding and C-H⋯π and C=O⋯π inter-actions stabilizing the crystal packing.Entities:
Keywords: alkylating agents; chiral crystallization; crystal structure
Year: 2018 PMID: 30319793 PMCID: PMC6176455 DOI: 10.1107/S2056989018012495
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom-numbering scheme and displacement ellipsoids drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of ring C1–C6.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3⋯O2 | 0.84 | 1.87 | 2.6079 (19) | 146 |
| O4—H4⋯O1 | 0.84 | 1.82 | 2.5592 (19) | 146 |
| O3—H3⋯O4i | 0.84 | 2.40 | 3.036 (2) | 133 |
| O4—H4⋯O2ii | 0.84 | 2.34 | 2.809 (2) | 116 |
| C7—H7⋯O2iii | 0.95 | 2.51 | 3.427 (2) | 162 |
| C10—H10 | 0.98 | 3.13 | 3.645 | 114 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2A view of the O—H⋯O hydrogen bonds (dashed lines) present in the crystal lattice of the title compound.
Figure 3Part of the crystal packing showing the C—H⋯π stacking interactions.
Experimental details
| Crystal data | |
| Chemical formula | C10H10O4 |
|
| 194.18 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 5.251 (2), 6.317 (2), 12.999 (5) |
| β (°) | 91.643 (4) |
|
| 431.0 (3) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.12 |
| Crystal size (mm) | 0.38 × 0.30 × 0.13 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.785, 0.785 |
| No. of measured, independent and observed [ | 2328, 1228, 1207 |
|
| 0.014 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.029, 0.082, 1.06 |
| No. of reflections | 1228 |
| No. of parameters | 131 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.22 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.5 (6) |
Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), SHELXTL (Sheldrick, 2008 ▸), WinGX (Farrugia, 2012 ▸), Mercury (Macrae et al., 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C10H10O4 | |
| Monoclinic, | Mo |
| Cell parameters from 2083 reflections | |
| θ = 3.1–27.5° | |
| µ = 0.12 mm−1 | |
| β = 91.643 (4)° | |
| Prism, yellow | |
| 0.38 × 0.30 × 0.13 mm |
| Bruker APEXII CCD diffractometer | 1228 independent reflections |
| Radiation source: fine-focus sealed tube | 1207 reflections with |
| Detector resolution: 8.3333 pixels mm-1 | |
| φ and ω scans | θmax = 27.5°, θmin = 1.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | |
| 2328 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 1228 reflections | Δρmin = −0.22 e Å−3 |
| 131 parameters | Absolute structure: Flack |
| 1 restraint | Absolute structure parameter: 0.5 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O4 | 0.7944 (2) | 0.8239 (2) | 0.27690 (9) | 0.0183 (3) | |
| H4 | 0.7357 | 0.8998 | 0.3237 | 0.027* | |
| O2 | −0.0040 (2) | 0.1772 (2) | 0.38214 (9) | 0.0193 (3) | |
| O1 | 0.5175 (2) | 0.9141 (2) | 0.42970 (9) | 0.0190 (3) | |
| O3 | 0.2530 (2) | 0.0865 (2) | 0.21917 (9) | 0.0174 (3) | |
| H3 | 0.1418 | 0.0689 | 0.2635 | 0.026* | |
| C3 | 0.5775 (3) | 0.3220 (3) | 0.17026 (11) | 0.0136 (3) | |
| C8 | 0.1144 (3) | 0.3446 (3) | 0.38843 (12) | 0.0150 (4) | |
| H8 | 0.0717 | 0.4408 | 0.4414 | 0.018* | |
| C4 | 0.7113 (3) | 0.5092 (3) | 0.18410 (12) | 0.0133 (3) | |
| C1 | 0.3173 (3) | 0.4049 (3) | 0.31924 (12) | 0.0128 (3) | |
| C2 | 0.3797 (3) | 0.2696 (3) | 0.23855 (12) | 0.0129 (3) | |
| C7 | 0.3981 (3) | 0.7489 (3) | 0.41517 (12) | 0.0153 (4) | |
| H7 | 0.2619 | 0.7174 | 0.4592 | 0.018* | |
| C5 | 0.6521 (3) | 0.6468 (3) | 0.26629 (12) | 0.0134 (4) | |
| C6 | 0.4550 (3) | 0.5985 (3) | 0.33345 (12) | 0.0125 (3) | |
| C9 | 0.6387 (3) | 0.1702 (3) | 0.08493 (12) | 0.0177 (4) | |
| H9A | 0.6259 | 0.2441 | 0.0187 | 0.027* | |
| H9B | 0.5177 | 0.0521 | 0.0848 | 0.027* | |
| H9C | 0.8122 | 0.1159 | 0.0958 | 0.027* | |
| C10 | 0.9192 (3) | 0.5739 (3) | 0.11251 (13) | 0.0179 (4) | |
| H10A | 1.0138 | 0.4482 | 0.0915 | 0.027* | |
| H10B | 1.0356 | 0.6726 | 0.1481 | 0.027* | |
| H10C | 0.8431 | 0.6429 | 0.0515 | 0.027* |
| O4 | 0.0187 (6) | 0.0167 (7) | 0.0198 (6) | −0.0064 (6) | 0.0074 (5) | −0.0031 (5) |
| O2 | 0.0174 (5) | 0.0194 (6) | 0.0214 (6) | −0.0060 (6) | 0.0049 (4) | −0.0018 (5) |
| O1 | 0.0228 (6) | 0.0164 (6) | 0.0180 (5) | −0.0036 (6) | 0.0033 (5) | −0.0035 (5) |
| O3 | 0.0179 (5) | 0.0158 (6) | 0.0186 (6) | −0.0052 (6) | 0.0051 (4) | −0.0035 (5) |
| C3 | 0.0127 (7) | 0.0166 (8) | 0.0117 (7) | 0.0021 (7) | 0.0015 (6) | −0.0001 (7) |
| C8 | 0.0130 (7) | 0.0172 (9) | 0.0148 (7) | −0.0010 (7) | 0.0022 (6) | 0.0000 (7) |
| C4 | 0.0108 (6) | 0.0163 (8) | 0.0130 (7) | 0.0007 (6) | 0.0024 (5) | 0.0020 (7) |
| C1 | 0.0109 (6) | 0.0151 (8) | 0.0123 (6) | 0.0000 (7) | 0.0009 (5) | 0.0007 (7) |
| C2 | 0.0115 (6) | 0.0128 (9) | 0.0144 (7) | −0.0017 (6) | 0.0000 (6) | 0.0010 (6) |
| C7 | 0.0162 (7) | 0.0154 (8) | 0.0142 (7) | 0.0003 (7) | 0.0018 (6) | 0.0012 (7) |
| C5 | 0.0114 (6) | 0.0151 (9) | 0.0137 (7) | −0.0014 (7) | 0.0001 (5) | 0.0011 (7) |
| C6 | 0.0115 (6) | 0.0139 (8) | 0.0120 (7) | 0.0001 (6) | 0.0011 (5) | 0.0011 (7) |
| C9 | 0.0185 (7) | 0.0192 (9) | 0.0157 (7) | 0.0000 (7) | 0.0034 (6) | −0.0048 (7) |
| C10 | 0.0146 (7) | 0.0227 (9) | 0.0166 (7) | −0.0003 (7) | 0.0062 (6) | 0.0012 (7) |
| O4—C5 | 1.350 (2) | C4—C10 | 1.511 (2) |
| O4—H4 | 0.84 | C1—C2 | 1.399 (2) |
| O2—C8 | 1.228 (2) | C1—C6 | 1.431 (2) |
| O1—C7 | 1.229 (2) | C7—C6 | 1.462 (2) |
| O3—C2 | 1.354 (2) | C7—H7 | 0.95 |
| O3—H3 | 0.84 | C5—C6 | 1.406 (2) |
| C3—C4 | 1.385 (3) | C9—H9A | 0.98 |
| C3—C2 | 1.424 (2) | C9—H9B | 0.98 |
| C3—C9 | 1.508 (2) | C9—H9C | 0.98 |
| C8—C1 | 1.464 (2) | C10—H10A | 0.98 |
| C8—H8 | 0.95 | C10—H10B | 0.98 |
| C4—C5 | 1.419 (2) | C10—H10C | 0.98 |
| C5—O4—H4 | 109.5 | C6—C7—H7 | 118.4 |
| C2—O3—H3 | 109.5 | O4—C5—C6 | 122.08 (14) |
| C4—C3—C2 | 119.60 (14) | O4—C5—C4 | 116.85 (13) |
| C4—C3—C9 | 121.36 (14) | C6—C5—C4 | 121.06 (16) |
| C2—C3—C9 | 119.04 (16) | C5—C6—C1 | 118.92 (14) |
| O2—C8—C1 | 123.97 (16) | C5—C6—C7 | 118.66 (16) |
| O2—C8—H8 | 118.0 | C1—C6—C7 | 122.42 (13) |
| C1—C8—H8 | 118.0 | C3—C9—H9A | 109.5 |
| C3—C4—C5 | 119.97 (14) | C3—C9—H9B | 109.5 |
| C3—C4—C10 | 121.60 (15) | H9A—C9—H9B | 109.5 |
| C5—C4—C10 | 118.43 (17) | C3—C9—H9C | 109.5 |
| C2—C1—C6 | 119.38 (13) | H9A—C9—H9C | 109.5 |
| C2—C1—C8 | 119.46 (16) | H9B—C9—H9C | 109.5 |
| C6—C1—C8 | 121.15 (15) | C4—C10—H10A | 109.5 |
| O3—C2—C1 | 122.45 (14) | C4—C10—H10B | 109.5 |
| O3—C2—C3 | 116.47 (14) | H10A—C10—H10B | 109.5 |
| C1—C2—C3 | 121.05 (16) | C4—C10—H10C | 109.5 |
| O1—C7—C6 | 123.30 (15) | H10A—C10—H10C | 109.5 |
| O1—C7—H7 | 118.4 | H10B—C10—H10C | 109.5 |
| C2—C3—C4—C5 | 0.4 (2) | C3—C4—C5—O4 | 178.32 (14) |
| C9—C3—C4—C5 | −178.85 (15) | C10—C4—C5—O4 | −2.5 (2) |
| C2—C3—C4—C10 | −178.81 (15) | C3—C4—C5—C6 | −1.3 (2) |
| C9—C3—C4—C10 | 2.0 (2) | C10—C4—C5—C6 | 177.94 (14) |
| O2—C8—C1—C2 | 1.9 (2) | O4—C5—C6—C1 | −178.18 (14) |
| O2—C8—C1—C6 | −177.34 (15) | C4—C5—C6—C1 | 1.4 (2) |
| C6—C1—C2—O3 | −178.32 (13) | O4—C5—C6—C7 | 2.0 (2) |
| C8—C1—C2—O3 | 2.5 (2) | C4—C5—C6—C7 | −178.41 (15) |
| C6—C1—C2—C3 | −0.2 (2) | C2—C1—C6—C5 | −0.6 (2) |
| C8—C1—C2—C3 | −179.44 (14) | C8—C1—C6—C5 | 178.56 (15) |
| C4—C3—C2—O3 | 178.56 (14) | C2—C1—C6—C7 | 179.16 (16) |
| C9—C3—C2—O3 | −2.2 (2) | C8—C1—C6—C7 | −1.6 (2) |
| C4—C3—C2—C1 | 0.4 (2) | O1—C7—C6—C5 | −1.6 (2) |
| C9—C3—C2—C1 | 179.61 (14) | O1—C7—C6—C1 | 178.61 (14) |
| H··· | ||||
| O3—H3···O2 | 0.84 | 1.87 | 2.6079 (19) | 146 |
| O4—H4···O1 | 0.84 | 1.82 | 2.5592 (19) | 146 |
| O3—H3···O4i | 0.84 | 2.40 | 3.036 (2) | 133 |
| O4—H4···O2ii | 0.84 | 2.34 | 2.809 (2) | 116 |
| C7—H7···O2iii | 0.95 | 2.51 | 3.427 (2) | 162 |
| C10—H10··· | 0.98 | 3.13 | 3.645 | 114 |