Literature DB >> 30317429

Prokaryotic Diversity and Distribution in Different Habitats of an Alpine Rock Glacier-Pond System.

I Mania1,2, R Gorra3, N Colombo4,5, M Freppaz3, M Martin3, A M Anesio6,7.   

Abstract

Rock glaciers (RG) are assumed to influence the biogeochemistry of downstream ecosystems because of the high ratio of rock:water in those systems, but no studies have considered the effects of a RG inflow on the microbial ecology of sediments in a downstream pond. An alpine RG-pond system, located in the NW Italian Alps has been chosen as a model, and Bacteria and Archaea 16S rRNA genes abundance, distribution and diversity have been assessed by qPCR and Illumina sequencing, coupled with geochemical analyses on sediments collected along a distance gradient from the RG inflow. RG surface material and neighbouring soil have been included in the analysis to better elucidate relationships among different habitats.Our results showed that different habitats harboured different, well-separated microbial assemblages. Across the pond, the main variations in community composition (e.g. Thaumarchaeota and Cyanobacteria relative abundance) and porewater geochemistry (pH, DOC, TDN and NH4+) were not directly linked to RG proximity, but to differences in water depth. Some microbial markers potentially linked to the presence of meltwater inputs from the RG have been recognised, although the RG seems to have a greater influence on the pond microbial communities due to its contribution in terms of sedimentary material.

Entities:  

Keywords:  16S rRNA; Alpine pond; Microbial ecology; Rock glacier; Sediments

Mesh:

Substances:

Year:  2018        PMID: 30317429     DOI: 10.1007/s00248-018-1272-3

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  43 in total

1.  A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite.

Authors:  K M Miranda; M G Espey; D A Wink
Journal:  Nitric Oxide       Date:  2001-02       Impact factor: 4.427

2.  Biogeographical distribution and ecological ranges of benthic cyanobacteria in East Antarctic lakes.

Authors:  Arnaud Taton; Stana Grubisic; Pierre Balthasart; Dominic A Hodgson; Johanna Laybourn-Parry; Annick Wilmotte
Journal:  FEMS Microbiol Ecol       Date:  2006-08       Impact factor: 4.194

3.  Microbial community succession in an unvegetated, recently deglaciated soil.

Authors:  Diana R Nemergut; Suzanne P Anderson; Cory C Cleveland; Andrew P Martin; Amy E Miller; Anton Seimon; Steven K Schmidt
Journal:  Microb Ecol       Date:  2006-12-22       Impact factor: 4.552

4.  Microbial community structure in polluted Baltic Sea sediments.

Authors:  Anna Edlund; Terence Soule; Sara Sjöling; Janet K Jansson
Journal:  Environ Microbiol       Date:  2006-02       Impact factor: 5.491

5.  Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Authors:  Qiong Wang; George M Garrity; James M Tiedje; James R Cole
Journal:  Appl Environ Microbiol       Date:  2007-06-22       Impact factor: 4.792

6.  Global ecological patterns in uncultured Archaea.

Authors:  Jean-Christophe Auguet; Albert Barberan; Emilio O Casamayor
Journal:  ISME J       Date:  2009-10-22       Impact factor: 10.302

7.  Associations between species and groups of sites: indices and statistical inference.

Authors:  Miquel De Cáceres; Pierre Legendre
Journal:  Ecology       Date:  2009-12       Impact factor: 5.499

8.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

9.  PyNAST: a flexible tool for aligning sequences to a template alignment.

Authors:  J Gregory Caporaso; Kyle Bittinger; Frederic D Bushman; Todd Z DeSantis; Gary L Andersen; Rob Knight
Journal:  Bioinformatics       Date:  2009-11-13       Impact factor: 6.937

10.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

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  1 in total

1.  Habitat filtering shapes the differential structure of microbial communities in the Xilingol grassland.

Authors:  Jie Yang; Yanfen Wang; Xiaoyong Cui; Kai Xue; Yiming Zhang; Zhisheng Yu
Journal:  Sci Rep       Date:  2019-12-18       Impact factor: 4.379

  1 in total

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