Literature DB >> 30316947

Conservation of mitochondrial genome arrangements in brittle stars (Echinodermata, Ophiuroidea).

Matthew P Galaska1, Yuanning Li2, Kevin M Kocot3, Andrew R Mahon4, Kenneth M Halanych5.   

Abstract

Brittle stars are conspicuous members of benthic ecosystems, fill many ecological niches and are the most speciose of all classes of echinoderms. With high levels of biodiversity, elucidating the evolutionary history of this group is important. Understanding of higher-level relationships within Ophiuroidea has been aided by multilocus nuclear data and DNA barcoding. However, the degree of consistency between mitochondrial and nuclear data within ophiuroids remains unclear and deserves further assessment. In this study, 17 mitochondrial genomes spanning the taxonomic breadth of Ophiuroidea were utilized to explore evolutionary relationships through maximum likelihood analyses, Bayesian inference and comparative assessment of gene order. Our phylogenetic analyses, based on both nucleotide and amino acid residues, support recent findings based on multilocus nuclear data and morphology, in that the brittle star clades Ophintegrida and Euryophiurida were recovered as monophyletic with the latter comprising Euyalida, Ophiuridae and Ophiopyrgidae. Only three different arrangements of the 13 protein coding and 2 ribosomal RNA genes were observed. As expected, tRNA genes were more likely to have undergone rearrangement but the order of all 37 genes was found to be conserved in all sampled Euryalida and Ophiuridae. Both Euryalida and the clade comprised of Ophiuridae and Ophiopyrgidae, each had their own conserved rearrangement of protein coding genes and ribosomal genes, after divergence from their last common ancestor. Euryalida has a rearrangement of the two ribosomal RNA genes, rrnS and rrnL, in contrast to Ophiuridae and Ophiopyrgidae, which had an inversion of the genes nad1, nad2, and cob relative to Ophintegrida. Further, our data support the gene order found in all sampled Euryalida as the most likely ancestral order for all Ophiuroidea.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Brittle star; Mitochondrial genome; Ophiuroidea; mtDNA

Mesh:

Substances:

Year:  2018        PMID: 30316947     DOI: 10.1016/j.ympev.2018.10.002

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  6 in total

1.  Conserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii.

Authors:  Darrin T Schultz; Jordan M Eizenga; Russell B Corbett-Detig; Warren R Francis; Lynne M Christianson; Steven H D Haddock
Journal:  PeerJ       Date:  2020-01-27       Impact factor: 2.984

2.  Assessment of mitochondrial genomes for heterobranch gastropod phylogenetics.

Authors:  Rebecca M Varney; Bastian Brenzinger; Manuel António E Malaquias; Christopher P Meyer; Michael Schrödl; Kevin M Kocot
Journal:  BMC Ecol Evol       Date:  2021-01-21

3.  The complete mitochondrial genome of a deep sea ophiuroid of the genus Amphiura (Ophiuroidea: Amphiuridae).

Authors:  Jieying Na; Dongsheng Zhang; Hong Cheng; Juan Yang; Ruiyan Zhang; Wanying Chen; Chunsheng Wang
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-23       Impact factor: 0.658

4.  Characterization of the complete mitochondrial genome of Amphioplus laevis (Ophiuroidea, Amphiuridae) with phylogenetic analysis.

Authors:  Qin-Zeng Xu; Yi-Xuan Li; Yue Dong
Journal:  Mitochondrial DNA B Resour       Date:  2019-09-18       Impact factor: 0.658

5.  Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea.

Authors:  Shao'e Sun; Ning Xiao; Zhongli Sha
Journal:  PeerJ       Date:  2022-07-28       Impact factor: 3.061

6.  Mitogenomes Reveal Alternative Initiation Codons and Lineage-Specific Gene Order Conservation in Echinoderms.

Authors:  Zheng Bin Randolph Quek; Jia Jin Marc Chang; Yin Cheong Aden Ip; Yong Kit Samuel Chan; Danwei Huang
Journal:  Mol Biol Evol       Date:  2021-03-09       Impact factor: 16.240

  6 in total

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