Literature DB >> 30307923

Designing efficient translation.

Thomas E Gorochowski1, Tom Ellis2.   

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Year:  2018        PMID： 30307923     DOI： 10.1038/nbt.4257

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  10 in total

1.  Composability of regulatory sequences controlling transcription and translation in Escherichia coli.

Authors:  Sriram Kosuri; Daniel B Goodman; Guillaume Cambray; Vivek K Mutalik; Yuan Gao; Adam P Arkin; Drew Endy; George M Church
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-07       Impact factor: 11.205

2.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

3.  Coding-sequence determinants of gene expression in Escherichia coli.

Authors:  Grzegorz Kudla; Andrew W Murray; David Tollervey; Joshua B Plotkin
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

4.  Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli.

Authors:  Guillaume Cambray; Joao C Guimaraes; Adam Paul Arkin
Journal:  Nat Biotechnol       Date:  2018-09-24       Impact factor: 54.908

5.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

Review 6.  Determinants of translation efficiency and accuracy.

Authors:  Hila Gingold; Yitzhak Pilpel
Journal:  Mol Syst Biol       Date:  2011-04-12       Impact factor: 11.429

7.  Predicting DNA hybridization kinetics from sequence.

Authors:  Jinny X Zhang; John Z Fang; Wei Duan; Lucia R Wu; Angela W Zhang; Neil Dalchau; Boyan Yordanov; Rasmus Petersen; Andrew Phillips; David Yu Zhang
Journal:  Nat Chem       Date:  2017-11-06       Impact factor: 24.427

8.  Design parameters to control synthetic gene expression in Escherichia coli.

Authors:  Mark Welch; Sridhar Govindarajan; Jon E Ness; Alan Villalobos; Austin Gurney; Jeremy Minshull; Claes Gustafsson
Journal:  PLoS One       Date:  2009-09-14       Impact factor: 3.240

9.  Positively charged residues are the major determinants of ribosomal velocity.

Authors:  Catherine A Charneski; Laurence D Hurst
Journal:  PLoS Biol       Date:  2013-03-12       Impact factor: 8.029

10.  Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate.

Authors:  Thomas E Gorochowski; Zoya Ignatova; Roel A L Bovenberg; Johannes A Roubos
Journal:  Nucleic Acids Res       Date:  2015-03-12       Impact factor: 16.971
  10 in total
  4 in total

1.  Design and Analysis of Massively Parallel Reporter Assays Using FORECAST.

Authors:  Pierre-Aurelien Gilliot; Thomas E Gorochowski
Journal:  Methods Mol Biol       Date:  2023

Review 2.  Towards an engineering theory of evolution.

Authors:  Simeon D Castle; Claire S Grierson; Thomas E Gorochowski
Journal:  Nat Commun       Date:  2021-06-07       Impact factor: 14.919

3.  Absolute quantification of translational regulation and burden using combined sequencing approaches.

Authors:  Thomas E Gorochowski; Irina Chelysheva; Mette Eriksen; Priyanka Nair; Steen Pedersen; Zoya Ignatova
Journal:  Mol Syst Biol       Date:  2019-05-03       Impact factor: 11.429

4.  Massively parallel characterization of engineered transcript isoforms using direct RNA sequencing.

Authors:  Matthew J Tarnowski; Thomas E Gorochowski
Journal:  Nat Commun       Date:  2022-01-21       Impact factor: 14.919
  4 in total

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