Literature DB >> 30305322

Retrotransposons in the development and progression of amyotrophic lateral sclerosis.

Abigail L Savage1, Gerald G Schumann2, Gerome Breen3, Vivien J Bubb1, Ammar Al-Chalabi4,5, John P Quinn6.   

Abstract

Endogenous retrotransposon sequences constitute approximately 42% of the human genome, and mobilisation of retrotransposons has resulted in rearrangements, duplications, deletions, novel transcripts and the introduction of new regulatory domains throughout the human genome. Both germline and somatic de novo retrotransposition events have been involved in a range of human diseases, and there is emerging evidence for the modulation of retrotransposon activity during the development of specific diseases. Particularly, there is unequivocal consensus that endogenous retrotransposition can occur in neuronal lineages. This review addresses our current knowledge of the different mechanisms through which retrotransposons might influence the development of and predisposition to amyotrophic lateral sclerosis. © Author(s) (or their employer(s)) 2019. Re-use permitted under CC BY. Published by BMJ.

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Keywords:  ALS; genetics

Mesh:

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Year:  2018        PMID: 30305322      PMCID: PMC6518469          DOI: 10.1136/jnnp-2018-319210

Source DB:  PubMed          Journal:  J Neurol Neurosurg Psychiatry        ISSN: 0022-3050            Impact factor:   10.154


  56 in total

1.  SVA elements: a hominid-specific retroposon family.

Authors:  Hui Wang; Jinchuan Xing; Deepak Grover; Dale J Hedges; Kyudong Han; Jerilyn A Walker; Mark A Batzer
Journal:  J Mol Biol       Date:  2005-10-19       Impact factor: 5.469

2.  Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.

Authors:  Alysson R Muotri; Vi T Chu; Maria C N Marchetto; Wei Deng; John V Moran; Fred H Gage
Journal:  Nature       Date:  2005-06-16       Impact factor: 49.962

3.  Structural variants caused by Alu insertions are associated with risks for many human diseases.

Authors:  Lindsay M Payer; Jared P Steranka; Wan Rou Yang; Maria Kryatova; Sibyl Medabalimi; Daniel Ardeljan; Chunhong Liu; Jef D Boeke; Dimitri Avramopoulos; Kathleen H Burns
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-02       Impact factor: 11.205

4.  Ataxin-2 as potential disease modifier in C9ORF72 expansion carriers.

Authors:  Marka van Blitterswijk; Bianca Mullen; Michael G Heckman; Matthew C Baker; Mariely DeJesus-Hernandez; Patricia H Brown; Melissa E Murray; Ging-Yuek R Hsiung; Heather Stewart; Anna M Karydas; Elizabeth Finger; Andrew Kertesz; Eileen H Bigio; Sandra Weintraub; Marsel Mesulam; Kimmo J Hatanpaa; Charles L White; Manuela Neumann; Michael J Strong; Thomas G Beach; Zbigniew K Wszolek; Carol Lippa; Richard Caselli; Leonard Petrucelli; Keith A Josephs; Joseph E Parisi; David S Knopman; Ronald C Petersen; Ian R Mackenzie; William W Seeley; Lea T Grinberg; Bruce L Miller; Kevin B Boylan; Neill R Graff-Radford; Bradley F Boeve; Dennis W Dickson; Rosa Rademakers
Journal:  Neurobiol Aging       Date:  2014-05-02       Impact factor: 4.673

5.  Incidence of amyotrophic lateral sclerosis in Europe.

Authors:  Giancarlo Logroscino; Bryan J Traynor; Orla Hardiman; Adriano Chiò; Douglas Mitchell; Robert J Swingler; Andrea Millul; Emma Benn; Ettore Beghi
Journal:  J Neurol Neurosurg Psychiatry       Date:  2009-08-25       Impact factor: 10.154

6.  Somatic retrotransposition alters the genetic landscape of the human brain.

Authors:  J Kenneth Baillie; Mark W Barnett; Kyle R Upton; Daniel J Gerhardt; Todd A Richmond; Fioravante De Sapio; Paul M Brennan; Patrizia Rizzu; Sarah Smith; Mark Fell; Richard T Talbot; Stefano Gustincich; Thomas C Freeman; John S Mattick; David A Hume; Peter Heutink; Piero Carninci; Jeffrey A Jeddeloh; Geoffrey J Faulkner
Journal:  Nature       Date:  2011-10-30       Impact factor: 49.962

7.  Ubiquitous L1 mosaicism in hippocampal neurons.

Authors:  Kyle R Upton; Daniel J Gerhardt; J Samuel Jesuadian; Sandra R Richardson; Francisco J Sánchez-Luque; Gabriela O Bodea; Adam D Ewing; Carmen Salvador-Palomeque; Marjo S van der Knaap; Paul M Brennan; Adeline Vanderver; Geoffrey J Faulkner
Journal:  Cell       Date:  2015-04-09       Impact factor: 41.582

Review 8.  Roles for retrotransposon insertions in human disease.

Authors:  Dustin C Hancks; Haig H Kazazian
Journal:  Mob DNA       Date:  2016-05-06

9.  Genetic screening in sporadic ALS and FTD.

Authors:  Martin R Turner; Ammar Al-Chalabi; Adriano Chio; Orla Hardiman; Matthew C Kiernan; Jonathan D Rohrer; James Rowe; William Seeley; Kevin Talbot
Journal:  J Neurol Neurosurg Psychiatry       Date:  2017-06-22       Impact factor: 10.154

10.  Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS.

Authors:  Lisa Krug; Nabanita Chatterjee; Rebeca Borges-Monroy; Stephen Hearn; Wen-Wei Liao; Kathleen Morrill; Lisa Prazak; Nikolay Rozhkov; Delphine Theodorou; Molly Hammell; Josh Dubnau
Journal:  PLoS Genet       Date:  2017-03-16       Impact factor: 5.917

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  9 in total

1.  CRISPR Deletion of a SVA Retrotransposon Demonstrates Function as a cis-Regulatory Element at the TRPV1/TRPV3 Intergenic Region.

Authors:  Emma Price; Olympia Gianfrancesco; Patrick T Harrison; Bernhard Frank; Vivien J Bubb; John P Quinn
Journal:  Int J Mol Sci       Date:  2021-02-15       Impact factor: 5.923

2.  Characterisation of the Function of a SINE-VNTR-Alu Retrotransposon to Modulate Isoform Expression at the MAPT Locus.

Authors:  Alexander Fröhlich; Abigail L Pfaff; Vivien J Bubb; Sulev Koks; John P Quinn
Journal:  Front Mol Neurosci       Date:  2022-03-09       Impact factor: 5.639

3.  Locus specific reduction of L1 expression in the cortices of individuals with amyotrophic lateral sclerosis.

Authors:  Abigail L Pfaff; Vivien J Bubb; John P Quinn; Sulev Koks
Journal:  Mol Brain       Date:  2022-03-28       Impact factor: 4.041

4.  TDP-43 regulates transcription at protein-coding genes and Alu retrotransposons.

Authors:  Andrés A Morera; Nasiha S Ahmed; Jacob C Schwartz
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-10-23       Impact factor: 6.304

5.  A HML6 endogenous retrovirus on chromosome 3 is upregulated in amyotrophic lateral sclerosis motor cortex.

Authors:  Ashley R Jones; Alfredo Iacoangeli; Brett N Adey; Harry Bowles; Aleksey Shatunov; Claire Troakes; Jeremy A Garson; Adele L McCormick; Ammar Al-Chalabi
Journal:  Sci Rep       Date:  2021-07-12       Impact factor: 4.996

6.  Frequency and methylation status of selected retrotransposition competent L1 loci in amyotrophic lateral sclerosis.

Authors:  Abigail L Savage; Ana Illera Lopez; Alfredo Iacoangeli; Vivien J Bubb; Bradley Smith; Claire Troakes; Nada Alahmady; Sulev Koks; Gerald G Schumann; Ammar Al-Chalabi; John P Quinn
Journal:  Mol Brain       Date:  2020-11-13       Impact factor: 4.399

7.  An Increased Burden of Highly Active Retrotransposition Competent L1s Is Associated with Parkinson's Disease Risk and Progression in the PPMI Cohort.

Authors:  Abigail L Pfaff; Vivien J Bubb; John P Quinn; Sulev Koks
Journal:  Int J Mol Sci       Date:  2020-09-08       Impact factor: 5.923

8.  Spatially Resolved Expression of Transposable Elements in Disease and Somatic Tissue with SpatialTE.

Authors:  Braulio Valdebenito-Maturana; Cristina Guatimosim; Mónica Alejandra Carrasco; Juan Carlos Tapia
Journal:  Int J Mol Sci       Date:  2021-12-20       Impact factor: 5.923

Review 9.  Retrotransposons as a Source of DNA Damage in Neurodegeneration.

Authors:  Eugenie Peze-Heidsieck; Tom Bonnifet; Rania Znaidi; Camille Ravel-Godreuil; Olivia Massiani-Beaudoin; Rajiv L Joshi; Julia Fuchs
Journal:  Front Aging Neurosci       Date:  2022-01-04       Impact factor: 5.750

  9 in total

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