Literature DB >> 30300578

Integrated Analysis of Genetic Ancestry and Genomic Alterations across Cancers.

Jiao Yuan1, Zhongyi Hu1, Brandon A Mahal2, Sihai D Zhao3, Kevin H Kensler4, Jingjiang Pi5, Xiaowen Hu1, Youyou Zhang1, Yueying Wang1, Junjie Jiang1, Chunsheng Li1, Xiaomin Zhong6, Kathleen T Montone7, Guoqiang Guan8, Janos L Tanyi9, Yi Fan10, Xiaowei Xu7, Mark A Morgan9, Meixiao Long11, Yuzhen Zhang5, Rugang Zhang12, Anil K Sood13, Timothy R Rebbeck4, Chi V Dang14, Lin Zhang15.   

Abstract

Disparities in cancer care have been a long-standing challenge. We estimated the genetic ancestry of The Cancer Genome Atlas patients, and performed a pan-cancer analysis on the influence of genetic ancestry on genomic alterations. Compared with European Americans, African Americans (AA) with breast, head and neck, and endometrial cancers exhibit a higher level of chromosomal instability, while a lower level of chromosomal instability was observed in AAs with kidney cancers. The frequencies of TP53 mutations and amplification of CCNE1 were increased in AAs in the cancer types showing higher levels of chromosomal instability. We observed lower frequencies of genomic alterations affecting genes in the PI3K pathway in AA patients across cancers. Our result provides insight into genomic contribution to cancer disparities.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  cancer disparities; cancer genetics; cancer genomics

Mesh:

Substances:

Year:  2018        PMID: 30300578      PMCID: PMC6348897          DOI: 10.1016/j.ccell.2018.08.019

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  55 in total

Review 1.  Epidemiology and pathophysiology of prostate cancer in African-American men.

Authors:  Isaac J Powell
Journal:  J Urol       Date:  2007-02       Impact factor: 7.450

2.  Estimating local ancestry in admixed populations.

Authors:  Sriram Sankararaman; Srinath Sridhar; Gad Kimmel; Eran Halperin
Journal:  Am J Hum Genet       Date:  2008-02       Impact factor: 11.025

3.  Disparities by Race, Age, and Sex in the Improvement of Survival for Major Cancers: Results From the National Cancer Institute Surveillance, Epidemiology, and End Results (SEER) Program in the United States, 1990 to 2010.

Authors:  Chenjie Zeng; Wanqing Wen; Alicia K Morgans; William Pao; Xiao-Ou Shu; Wei Zheng
Journal:  JAMA Oncol       Date:  2015-04       Impact factor: 31.777

4.  Cancer statistics, 2016.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2016-01-07       Impact factor: 508.702

5.  Comparison of Prevalence and Types of Mutations in Lung Cancers Among Black and White Populations.

Authors:  Joshua D Campbell; Christopher Lathan; Lynette Sholl; Matthew Ducar; Mikenah Vega; Ashwini Sunkavalli; Ling Lin; Megan Hanna; Laura Schubert; Aaron Thorner; Nicholas Faris; David R Williams; Raymond U Osarogiagbon; Paul van Hummelen; Matthew Meyerson; Laura MacConaill
Journal:  JAMA Oncol       Date:  2017-06-01       Impact factor: 31.777

6.  Gene expression patterns associated with p53 status in breast cancer.

Authors:  Melissa A Troester; Jason I Herschkowitz; Daniel S Oh; Xiaping He; Katherine A Hoadley; Claire S Barbier; Charles M Perou
Journal:  BMC Cancer       Date:  2006-12-06       Impact factor: 4.430

7.  Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer.

Authors:  Bi-Dar Wang; Kristin Ceniccola; SuJin Hwang; Ramez Andrawis; Anelia Horvath; Jennifer A Freedman; Jacqueline Olender; Stefan Knapp; Travers Ching; Lana Garmire; Vyomesh Patel; Mariano A Garcia-Blanco; Steven R Patierno; Norman H Lee
Journal:  Nat Commun       Date:  2017-06-30       Impact factor: 14.919

8.  Comparative genomic analysis of esophageal squamous cell carcinoma between Asian and Caucasian patient populations.

Authors:  Jiaying Deng; Hu Chen; Daizhan Zhou; Junhua Zhang; Yun Chen; Qi Liu; Dashan Ai; Hanting Zhu; Li Chu; Wenjia Ren; Xiaofei Zhang; Yi Xia; Menghong Sun; Huiwen Zhang; Jun Li; Xinxin Peng; Liang Li; Leng Han; Hui Lin; Xiujun Cai; Jiaqing Xiang; Shufeng Chen; Yihua Sun; Yawei Zhang; Jie Zhang; Haiquan Chen; Shijian Zhang; Yi Zhao; Yun Liu; Han Liang; Kuaile Zhao
Journal:  Nat Commun       Date:  2017-11-16       Impact factor: 14.919

9.  Clock-like mutational processes in human somatic cells.

Authors:  Ludmil B Alexandrov; Philip H Jones; David C Wedge; Julian E Sale; Peter J Campbell; Serena Nik-Zainal; Michael R Stratton
Journal:  Nat Genet       Date:  2015-11-09       Impact factor: 38.330

10.  A novel genomic alteration of LSAMP associates with aggressive prostate cancer in African American men.

Authors:  Gyorgy Petrovics; Hua Li; Tanja Stümpel; Shyh-Han Tan; Denise Young; Shilpa Katta; Qiyuan Li; Kai Ying; Bernward Klocke; Lakshmi Ravindranath; Indu Kohaar; Yongmei Chen; Dezső Ribli; Korbinian Grote; Hua Zou; Joseph Cheng; Clifton L Dalgard; Shimin Zhang; István Csabai; Jacob Kagan; David Takeda; Massimo Loda; Sudhir Srivastava; Matthias Scherf; Martin Seifert; Timo Gaiser; David G McLeod; Zoltan Szallasi; Reinhard Ebner; Thomas Werner; Isabell A Sesterhenn; Matthew Freedman; Albert Dobi; Shiv Srivastava
Journal:  EBioMedicine       Date:  2015-10-31       Impact factor: 8.143

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  68 in total

Review 1.  Evaluating the promise of inclusion of African ancestry populations in genomics.

Authors:  Amy R Bentley; Shawneequa L Callier; Charles N Rotimi
Journal:  NPJ Genom Med       Date:  2020-02-25       Impact factor: 8.617

2.  Somatic mutations of triple-negative breast cancer: a comparison between Black and White women.

Authors:  Angela R Omilian; Lei Wei; Chi-Chen Hong; Elisa V Bandera; Song Liu; Thaer Khoury; Christine B Ambrosone; Song Yao
Journal:  Breast Cancer Res Treat       Date:  2020-05-21       Impact factor: 4.872

3.  TP53 missense mutation is associated with increased tumor-infiltrating T cells in primary prostate cancer.

Authors:  Harsimar B Kaur; Jiayun Lu; Liana B Guedes; Laneisha Maldonado; Logan Reitz; John R Barber; Angelo M De Marzo; Scott A Tomlins; Karen S Sfanos; Mario Eisenberger; Edward M Schaeffer; Corinne E Joshu; Tamara L Lotan
Journal:  Hum Pathol       Date:  2019-03-06       Impact factor: 3.466

4.  Pan-cancer clinical and molecular analysis of racial disparities.

Authors:  Olivia D Lara; Ying Wang; Amma Asare; Tao Xu; Hua-Sheng Chiu; Yuexin Liu; Wei Hu; Pavel Sumazin; Shitanshu Uppal; Lin Zhang; J Alejandro Rauh-Hain; Anil K Sood
Journal:  Cancer       Date:  2019-11-15       Impact factor: 6.860

5.  Upregulation of miR-130b Contributes to Risk of Poor Prognosis and Racial Disparity in African-American Prostate Cancer.

Authors:  Yutaka Hashimoto; Marisa Shiina; Pritha Dasgupta; Priyanka Kulkarni; Taku Kato; Ryan K Wong; Yuichiro Tanaka; Varahram Shahryari; Shigekatsu Maekawa; Soichiro Yamamura; Sharanjot Saini; Guoren Deng; Z Laura Tabatabai; Shahana Majid; Rajvir Dahiya
Journal:  Cancer Prev Res (Phila)       Date:  2019-07-02

6.  CDKN1B Deletions are Associated with Metastasis in African American Men with Clinically Localized, Surgically Treated Prostate Cancer.

Authors:  Scott A Tomlins; Edward M Schaeffer; Tamara L Lotan; Farzana A Faisal; Sanjana Murali; Harsimar Kaur; Thiago Vidotto; Liana B Guedes; Daniela Correia Salles; Vishal Kothari; Jeffrey J Tosoian; Sumin Han; Daniel H Hovelson; Kevin Hu; Daniel E Spratt; Alexander S Baras
Journal:  Clin Cancer Res       Date:  2020-01-22       Impact factor: 12.531

7.  Genomic Profiling of Prostate Cancers from Men with African and European Ancestry.

Authors:  Yusuke Koga; Hanbing Song; Zachary R Chalmers; Joshua D Campbell; Franklin W Huang; Justin Newberg; Eejung Kim; Jian Carrot-Zhang; Daphnee Piou; Paz Polak; Sarki A Abdulkadir; Elad Ziv; Matthew Meyerson; Garrett M Frampton
Journal:  Clin Cancer Res       Date:  2020-07-10       Impact factor: 12.531

8.  PopInf: An Approach for Reproducibly Visualizing and Assigning Population Affiliation in Genomic Samples of Uncertain Origin.

Authors:  Angela M Taravella Oill; Anagha J Deshpande; Heini M Natri; Melissa A Wilson
Journal:  J Comput Biol       Date:  2020-10-19       Impact factor: 1.479

9.  Whole-Exome Profiling of NSCLC Among African Americans.

Authors:  Rony F Arauz; Jung S Byun; Mayank Tandon; Sanju Sinha; Skyler Kuhn; Sheryse Taylor; Adriana Zingone; Khadijah A Mitchell; Sharon R Pine; Kevin Gardner; Eliseo J Perez-Stable; Anna M Napoles; Bríd M Ryan
Journal:  J Thorac Oncol       Date:  2020-09-12       Impact factor: 15.609

10.  Calling Attention to the Role of Race-Driven Societal Determinants of Health on Aggressive Tumor Biology: A Focus on Black Americans.

Authors:  Kimlin T Ashing; Veronica Jones; Fornati Bedell; Tanyanika Phillips; Loretta Erhunmwunsee
Journal:  JCO Oncol Pract       Date:  2021-07-13
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