Literature DB >> 30296214

Learning Compact q -Space Representations for Multi-Shell Diffusion-Weighted MRI.

Daan Christiaens, Lucilio Cordero-Grande, Jana Hutter, Anthony N Price, Maria Deprez, Joseph V Hajnal.   

Abstract

Diffusion-weighted MRI measures the direction and scale of the local diffusion process in every voxel through its spectrum in q -space, typically acquired in one or more shells. Recent developments in microstructure imaging and multi-tissue decomposition have sparked renewed attention in the radial b -value dependence of the signal. Applications in motion correction and outlier rejection, therefore, require a compact linear signal representation that extends over the radial as well as angular domain. Here, we introduce SHARD, a data-driven representation of the q$ -space signal based on spherical harmonics and a radial decomposition into orthonormal components. This representation provides a complete, orthogonal signal basis, tailored to the spherical geometry of q -space, and calibrated to the data at hand. We demonstrate that the rank-reduced decomposition outperforms model-based alternatives in human brain data, while faithfully capturing the micro- and meso-structural information in the signal. Furthermore, we validate the potential of joint radial-spherical as compared with single-shell representations. As such, SHARD is optimally suited for applications that require low-rank signal predictions, such as motion correction and outlier rejection. Finally, we illustrate its application for the latter using outlier robust regression.

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Year:  2018        PMID: 30296214     DOI: 10.1109/TMI.2018.2873736

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  7 in total

1.  Multi-band- and in-plane-accelerated diffusion MRI enabled by model-based deep learning in q-space and its extension to learning in the spherical harmonic domain.

Authors:  Merry Mani; Baolian Yang; Girish Bathla; Vincent Magnotta; Mathews Jacob
Journal:  Magn Reson Med       Date:  2021-11-26       Impact factor: 4.668

2.  The Developing Human Connectome Project Neonatal Data Release.

Authors:  A David Edwards; Daniel Rueckert; Stephen M Smith; Samy Abo Seada; Amir Alansary; Jennifer Almalbis; Joanna Allsop; Jesper Andersson; Tomoki Arichi; Sophie Arulkumaran; Matteo Bastiani; Dafnis Batalle; Luke Baxter; Jelena Bozek; Eleanor Braithwaite; Jacqueline Brandon; Olivia Carney; Andrew Chew; Daan Christiaens; Raymond Chung; Kathleen Colford; Lucilio Cordero-Grande; Serena J Counsell; Harriet Cullen; John Cupitt; Charles Curtis; Alice Davidson; Maria Deprez; Louise Dillon; Konstantina Dimitrakopoulou; Ralica Dimitrova; Eugene Duff; Shona Falconer; Seyedeh-Rezvan Farahibozorg; Sean P Fitzgibbon; Jianliang Gao; Andreia Gaspar; Nicholas Harper; Sam J Harrison; Emer J Hughes; Jana Hutter; Mark Jenkinson; Saad Jbabdi; Emily Jones; Vyacheslav Karolis; Vanessa Kyriakopoulou; Gregor Lenz; Antonios Makropoulos; Shaihan Malik; Luke Mason; Filippo Mortari; Chiara Nosarti; Rita G Nunes; Camilla O'Keeffe; Jonathan O'Muircheartaigh; Hamel Patel; Jonathan Passerat-Palmbach; Maximillian Pietsch; Anthony N Price; Emma C Robinson; Mary A Rutherford; Andreas Schuh; Stamatios Sotiropoulos; Johannes Steinweg; Rui Pedro Azeredo Gomes Teixeira; Tencho Tenev; Jacques-Donald Tournier; Nora Tusor; Alena Uus; Katy Vecchiato; Logan Z J Williams; Robert Wright; Julia Wurie; Joseph V Hajnal
Journal:  Front Neurosci       Date:  2022-05-23       Impact factor: 5.152

3.  Abnormal Microstructural Development of the Cerebral Cortex in Neonates With Congenital Heart Disease Is Associated With Impaired Cerebral Oxygen Delivery.

Authors:  Christopher J Kelly; Daan Christiaens; Dafnis Batalle; Antonios Makropoulos; Lucilio Cordero-Grande; Johannes K Steinweg; Jonathan O'Muircheartaigh; Hammad Khan; Geraint Lee; Suresh Victor; Daniel C Alexander; Hui Zhang; John Simpson; Joseph V Hajnal; A David Edwards; Mary A Rutherford; Serena J Counsell
Journal:  J Am Heart Assoc       Date:  2019-03-05       Impact factor: 5.501

4.  On the need for bundle-specific microstructure kernels in diffusion MRI.

Authors:  Daan Christiaens; Jelle Veraart; Lucilio Cordero-Grande; Anthony N Price; Jana Hutter; Joseph V Hajnal; J-Donald Tournier
Journal:  Neuroimage       Date:  2019-12-14       Impact factor: 7.400

5.  dStripe: Slice artefact correction in diffusion MRI via constrained neural network.

Authors:  Maximilian Pietsch; Daan Christiaens; Joseph V Hajnal; J-Donald Tournier
Journal:  Med Image Anal       Date:  2021-09-25       Impact factor: 8.545

6.  A data-driven approach to optimising the encoding for multi-shell diffusion MRI with application to neonatal imaging.

Authors:  Jacques-Donald Tournier; Daan Christiaens; Jana Hutter; Anthony N Price; Lucilio Cordero-Grande; Emer Hughes; Matteo Bastiani; Stamatios N Sotiropoulos; Stephen M Smith; Daniel Rueckert; Serena J Counsell; A David Edwards; Joseph V Hajnal
Journal:  NMR Biomed       Date:  2020-07-06       Impact factor: 4.478

7.  Development of Microstructural and Morphological Cortical Profiles in the Neonatal Brain.

Authors:  Daphna Fenchel; Ralica Dimitrova; Jakob Seidlitz; Emma C Robinson; Dafnis Batalle; Jana Hutter; Daan Christiaens; Maximilian Pietsch; Jakki Brandon; Emer J Hughes; Joanna Allsop; Camilla O'Keeffe; Anthony N Price; Lucilio Cordero-Grande; Andreas Schuh; Antonios Makropoulos; Jonathan Passerat-Palmbach; Jelena Bozek; Daniel Rueckert; Joseph V Hajnal; Armin Raznahan; Grainne McAlonan; A David Edwards; Jonathan O'Muircheartaigh
Journal:  Cereb Cortex       Date:  2020-10-01       Impact factor: 5.357

  7 in total

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