Literature DB >> 30295650

CRISPR/Cas9 Gene Editing to Make Conditional Mutants of Human Malaria Parasite P. falciparum.

Heather M Kudyba1, David W Cobb2, Anat Florentin1, Michelle Krakowiak2, Vasant Muralidharan3.   

Abstract

Malaria is a significant cause of morbidity and mortality worldwide. This disease, which primarily affects those living in tropical and subtropical regions, is caused by infection with Plasmodium parasites. The development of more effective drugs to combat malaria can be accelerated by improving our understanding of the biology of this complex parasite. Genetic manipulation of these parasites is key to understanding their biology; however, historically the genome of P. falciparum has been difficult to manipulate. Recently, CRISPR/Cas9 genome editing has been utilized in malaria parasites, allowing for easier protein tagging, generation of conditional protein knockdowns, and deletion of genes. CRISPR/Cas9 genome editing has proven to be a powerful tool for advancing the field of malaria research. Here, we describe a CRISPR/Cas9 method for generating glmS-based conditional knockdown mutants in P. falciparum. This method is highly adaptable to other types of genetic manipulations, including protein tagging and gene knockouts.

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Year:  2018        PMID: 30295650      PMCID: PMC6235188          DOI: 10.3791/57747

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  32 in total

1.  Plasmodium food vacuole plasmepsins are activated by falcipains.

Authors:  Mark E Drew; Ritu Banerjee; Eric W Uffman; Scott Gilbertson; Philip J Rosenthal; Daniel E Goldberg
Journal:  J Biol Chem       Date:  2008-02-28       Impact factor: 5.157

Review 2.  Genome editing. The new frontier of genome engineering with CRISPR-Cas9.

Authors:  Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

3.  Asparagine repeat function in a Plasmodium falciparum protein assessed via a regulatable fluorescent affinity tag.

Authors:  Vasant Muralidharan; Anna Oksman; Mari Iwamoto; Thomas J Wandless; Daniel E Goldberg
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

4.  PTEX component HSP101 mediates export of diverse malaria effectors into host erythrocytes.

Authors:  Josh R Beck; Vasant Muralidharan; Anna Oksman; Daniel E Goldberg
Journal:  Nature       Date:  2014-07-16       Impact factor: 49.962

5.  The Exported Chaperone PfHsp70x Is Dispensable for the Plasmodium falciparum Intraerythrocytic Life Cycle.

Authors:  David W Cobb; Anat Florentin; Manuel A Fierro; Michelle Krakowiak; Julie M Moore; Vasant Muralidharan
Journal:  mSphere       Date:  2017-09-27       Impact factor: 4.389

6.  UDP-galactose and acetyl-CoA transporters as Plasmodium multidrug resistance genes.

Authors:  Michelle Yi-Xiu Lim; Gregory LaMonte; Marcus C S Lee; Christin Reimer; Bee Huat Tan; Victoria Corey; Bianca F Tjahjadi; Adeline Chua; Marie Nachon; René Wintjens; Peter Gedeck; Benoit Malleret; Laurent Renia; Ghislain M C Bonamy; Paul Chi-Lui Ho; Bryan K S Yeung; Eric D Chow; Liting Lim; David A Fidock; Thierry T Diagana; Elizabeth A Winzeler; Pablo Bifani
Journal:  Nat Microbiol       Date:  2016-09-19       Impact factor: 17.745

7.  Small molecule inhibition of apicomplexan FtsH1 disrupts plastid biogenesis in human pathogens.

Authors:  Katherine Amberg-Johnson; Sanjay B Hari; Suresh M Ganesan; Hernan A Lorenzi; Robert T Sauer; Jacquin C Niles; Ellen Yeh
Journal:  Elife       Date:  2017-08-18       Impact factor: 8.140

8.  EuPaGDT: a web tool tailored to design CRISPR guide RNAs for eukaryotic pathogens.

Authors:  Duo Peng; Rick Tarleton
Journal:  Microb Genom       Date:  2015-10-30

9.  Inducible knockdown of Plasmodium gene expression using the glmS ribozyme.

Authors:  Parichat Prommana; Chairat Uthaipibull; Chayaphat Wongsombat; Sumalee Kamchonwongpaisan; Yongyuth Yuthavong; Ellen Knuepfer; Anthony A Holder; Philip J Shaw
Journal:  PLoS One       Date:  2013-08-30       Impact factor: 3.240

10.  CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.

Authors:  Kornel Labun; Tessa G Montague; James A Gagnon; Summer B Thyme; Eivind Valen
Journal:  Nucleic Acids Res       Date:  2016-05-16       Impact factor: 16.971

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  5 in total

1.  Plastid biogenesis in malaria parasites requires the interactions and catalytic activity of the Clp proteolytic system.

Authors:  Anat Florentin; Dylon R Stephens; Carrie F Brooks; Rodrigo P Baptista; Vasant Muralidharan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-01       Impact factor: 11.205

Review 2.  The Stem Cell Revolution Revealing Protozoan Parasites' Secrets and Paving the Way towards Vaccine Development.

Authors:  Alena Pance
Journal:  Vaccines (Basel)       Date:  2021-01-31

Review 3.  Cutting back malaria: CRISPR/Cas9 genome editing of Plasmodium.

Authors:  Marcus C S Lee; Scott E Lindner; Jose-Juan Lopez-Rubio; Manuel Llinás
Journal:  Brief Funct Genomics       Date:  2019-09-24       Impact factor: 4.241

4.  A redox-active crosslinker reveals an essential and inhibitable oxidative folding network in the endoplasmic reticulum of malaria parasites.

Authors:  David W Cobb; Heather M Kudyba; Alejandra Villegas; Michael R Hoopmann; Rodrigo P Baptista; Baylee Bruton; Michelle Krakowiak; Robert L Moritz; Vasant Muralidharan
Journal:  PLoS Pathog       Date:  2021-02-03       Impact factor: 6.823

Review 5.  Viruses of protozoan parasites and viral therapy: Is the time now right?

Authors:  Paul Barrow; Jean Claude Dujardin; Nicolas Fasel; Alex D Greenwood; Klaus Osterrieder; George Lomonossoff; Pier Luigi Fiori; Robert Atterbury; Matteo Rossi; Marco Lalle
Journal:  Virol J       Date:  2020-09-29       Impact factor: 4.099

  5 in total

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