Literature DB >> 30292218

Onset of natural selection in populations of autocatalytic heteropolymers.

Alexei V Tkachenko1, Sergei Maslov2.   

Abstract

Reduction of information entropy along with ever-increasing complexity is among the key signatures of life. Understanding the onset of such behavior in the early prebiotic world is essential for solving the problem of the origin of life. Here we study a general problem of heteropolymers capable of template-assisted ligation based on Watson-Crick-like hybridization. The system is driven off-equilibrium by cyclic changes in the environment. We model the dynamics of 2-mers, i.e., sequential pairs of specific monomers within the heteropolymer population. While the possible number of them is Z 2 (where Z is the number of monomer types), we observe that most of the 2-mers get extinct, leaving no more than 2Z survivors. This leads to a dramatic reduction of the information entropy in the sequence space. Our numerical results are supported by a general mathematical analysis of the competition of growing polymers for constituent monomers. This natural-selection-like process ultimately results in a limited subset of polymer sequences. Importantly, the set of surviving sequences depends on initial concentrations of monomers and remains exponentially large (2 L down from Z L for length L) in each of realizations. Thus, an inhomogeneity in initial conditions allows for a massively parallel search of the sequence space for biologically functional polymers, such as ribozymes. We also propose potential experimental implementations of our model in the contexts of either biopolymers or artificial nano-structures.

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Year:  2018        PMID: 30292218     DOI: 10.1063/1.5048488

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Multistability and regime shifts in microbial communities explained by competition for essential nutrients.

Authors:  Veronika Dubinkina; Yulia Fridman; Parth Pratim Pandey; Sergei Maslov
Journal:  Elife       Date:  2019-11-22       Impact factor: 8.140

2.  Structured sequences emerge from random pool when replicated by templated ligation.

Authors:  Patrick W Kudella; Alexei V Tkachenko; Annalena Salditt; Sergei Maslov; Dieter Braun
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

3.  Driving forces in the origins of life.

Authors:  K A Dill; L Agozzino
Journal:  Open Biol       Date:  2021-02-03       Impact factor: 6.411

4.  Thermodynamic and Kinetic Sequence Selection in Enzyme-Free Polymer Self-Assembly inside a Non-equilibrium RNA Reactor.

Authors:  Tobias Göppel; Joachim H Rosenberger; Bernhard Altaner; Ulrich Gerland
Journal:  Life (Basel)       Date:  2022-04-10

5.  Computer simulations of Template-Directed RNA Synthesis driven by temperature cycling in diverse sequence mixtures.

Authors:  Pouyan Chamanian; Paul G Higgs
Journal:  PLoS Comput Biol       Date:  2022-08-24       Impact factor: 4.779

  5 in total

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