Literature DB >> 30290179

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation.

Clayton E Friedman1, Quan Nguyen2, Samuel W Lukowski2, Abbigail Helfer1, Han Sheng Chiu1, Jason Miklas3, Shiri Levy3, Shengbao Suo4, Jing-Dong Jackie Han4, Pierre Osteil5, Guangdun Peng6, Naihe Jing7, Greg J Baillie2, Anne Senabouth2, Angelika N Christ2, Timothy J Bruxner2, Charles E Murry3, Emily S Wong8, Jun Ding9, Yuliang Wang10, James Hudson11, Hannele Ruohola-Baker3, Ziv Bar-Joseph9, Patrick P L Tam12, Joseph E Powell13, Nathan J Palpant14.   

Abstract

Cardiac differentiation of human pluripotent stem cells (hPSCs) requires orchestration of dynamic gene regulatory networks during stepwise fate transitions but often generates immature cell types that do not fully recapitulate properties of their adult counterparts, suggesting incomplete activation of key transcriptional networks. We performed extensive single-cell transcriptomic analyses to map fate choices and gene expression programs during cardiac differentiation of hPSCs and identified strategies to improve in vitro cardiomyocyte differentiation. Utilizing genetic gain- and loss-of-function approaches, we found that hypertrophic signaling is not effectively activated during monolayer-based cardiac differentiation, thereby preventing expression of HOPX and its activation of downstream genes that govern late stages of cardiomyocyte maturation. This study therefore provides a key transcriptional roadmap of in vitro cardiac differentiation at single-cell resolution, revealing fundamental mechanisms underlying heart development and differentiation of hPSC-derived cardiomyocytes.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPRi; HOPX; cardiomyocytes; development; heart; human pluripotent stem cells; hypertrophy; in silico lineage tracing; scdiff; single-cell RNA-seq

Mesh:

Substances:

Year:  2018        PMID: 30290179      PMCID: PMC6220122          DOI: 10.1016/j.stem.2018.09.009

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  45 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

3.  Transcriptome of human foetal heart compared with cardiomyocytes from pluripotent stem cells.

Authors:  Cathelijne W van den Berg; Satoshi Okawa; Susana M Chuva de Sousa Lopes; Liesbeth van Iperen; Robert Passier; Stefan R Braam; Leon G Tertoolen; Antonio del Sol; Richard P Davis; Christine L Mummery
Journal:  Development       Date:  2015-07-24       Impact factor: 6.868

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Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-15       Impact factor: 11.205

5.  Transcriptomic Profiling Maps Anatomically Patterned Subpopulations among Single Embryonic Cardiac Cells.

Authors:  Guang Li; Adele Xu; Sopheak Sim; James R Priest; Xueying Tian; Tooba Khan; Thomas Quertermous; Bin Zhou; Philip S Tsao; Stephen R Quake; Sean M Wu
Journal:  Dev Cell       Date:  2016-11-10       Impact factor: 12.270

6.  Generating high-purity cardiac and endothelial derivatives from patterned mesoderm using human pluripotent stem cells.

Authors:  Nathan J Palpant; Lil Pabon; Clayton E Friedman; Meredith Roberts; Brandon Hadland; Rebecca J Zaunbrecher; Irwin Bernstein; Ying Zheng; Charles E Murry
Journal:  Nat Protoc       Date:  2016-12-01       Impact factor: 13.491

7.  A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.

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Journal:  Science       Date:  2015-06-26       Impact factor: 47.728

9.  Single-Cell Resolution of Temporal Gene Expression during Heart Development.

Authors:  Daniel M DeLaughter; Alexander G Bick; Hiroko Wakimoto; David McKean; Joshua M Gorham; Irfan S Kathiriya; John T Hinson; Jason Homsy; Jesse Gray; William Pu; Benoit G Bruneau; J G Seidman; Christine E Seidman
Journal:  Dev Cell       Date:  2016-11-10       Impact factor: 12.270

10.  Decoding the regulatory network of early blood development from single-cell gene expression measurements.

Authors:  Victoria Moignard; Steven Woodhouse; Laleh Haghverdi; Andrew J Lilly; Yosuke Tanaka; Adam C Wilkinson; Florian Buettner; Iain C Macaulay; Wajid Jawaid; Evangelia Diamanti; Shin-Ichi Nishikawa; Nir Piterman; Valerie Kouskoff; Fabian J Theis; Jasmin Fisher; Berthold Göttgens
Journal:  Nat Biotechnol       Date:  2015-02-09       Impact factor: 54.908

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  78 in total

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Review 2.  Pluripotent Stem Cell-Derived Cardiomyocyte Transplantation for Heart Disease Treatment.

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Journal:  Curr Cardiol Rep       Date:  2019-06-21       Impact factor: 2.931

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Review 6.  Cardiomyocyte Maturation: New Phase in Development.

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Review 7.  Human pluripotent stem cell-derived cardiac stromal cells and their applications in regenerative medicine.

Authors:  Martha E Floy; Taylor D Mateyka; Koji L Foreman; Sean P Palecek
Journal:  Stem Cell Res       Date:  2020-04-27       Impact factor: 2.020

8.  Single-cell RNA-seq identifies a reversible mesodermal activation in abnormally specified epithelia of p63 EEC syndrome.

Authors:  Eduardo Soares; Quan Xu; Qingqing Li; Jieqiong Qu; Yuxuan Zheng; Henriette H M Raeven; Karina O Brandao; Isabelle Petit; Willem M R van den Akker; Simon J van Heeringen; Daniel Aberdam; Fuchou Tang; Huiqing Zhou
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9.  Single-Cell Delineation of Who's on First and Second Heart Fields During Development.

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10.  Cell lineage inference from SNP and scRNA-Seq data.

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