Literature DB >> 30290147

Transcript Buffering: A Balancing Act between mRNA Synthesis and mRNA Degradation.

H Th Marc Timmers1, László Tora2.   

Abstract

Transcript buffering involves reciprocal adjustments between overall rates in mRNA synthesis and degradation to maintain similar cellular concentrations of mRNAs. This phenomenon was first discovered in yeast and encompasses coordination between the nuclear and cytoplasmic compartments. Transcript buffering was revealed by novel methods for pulse labeling of RNA to determine in vivo synthesis and degradation rates. In this Perspective, we discuss the current knowledge of transcript buffering. Emphasis is placed on the future challenges to determine the nature and directionality of the buffering signals, the generality of transcript buffering beyond yeast, and the molecular mechanisms responsible for this balancing.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CCR4-NOT; SAGA; TFIID; XRN1; deadenylation; decapping; mRNA degradation; mRNA synthesis; pol II transcription; transcript buffering

Mesh:

Substances:

Year:  2018        PMID: 30290147     DOI: 10.1016/j.molcel.2018.08.023

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  22 in total

1.  De Novo Heterozygous POLR2A Variants Cause a Neurodevelopmental Syndrome with Profound Infantile-Onset Hypotonia.

Authors:  Hanneke A Haijes; Maria J E Koster; Holger Rehmann; Dong Li; Hakon Hakonarson; Gerarda Cappuccio; Miroslava Hancarova; Daphne Lehalle; Willie Reardon; G Bradley Schaefer; Anna Lehman; Ingrid M B H van de Laar; Coranne D Tesselaar; Clesson Turner; Alice Goldenberg; Sophie Patrier; Julien Thevenon; Michele Pinelli; Nicola Brunetti-Pierri; Darina Prchalová; Markéta Havlovicová; Markéta Vlckova; Zdeněk Sedláček; Elena Lopez; Vassilis Ragoussis; Alistair T Pagnamenta; Usha Kini; Harmjan R Vos; Robert M van Es; Richard F M A van Schaik; Ton A J van Essen; Maria Kibaek; Jenny C Taylor; Jennifer Sullivan; Vandana Shashi; Slave Petrovski; Christina Fagerberg; Donna M Martin; Koen L I van Gassen; Rolph Pfundt; Marni J Falk; Elizabeth M McCormick; H T Marc Timmers; Peter M van Hasselt
Journal:  Am J Hum Genet       Date:  2019-07-25       Impact factor: 11.025

2.  Nonsense-mediated mRNA decay of the ferric and cupric reductase mRNAs FRE1 and FRE2 in Saccharomyces cerevisiae.

Authors:  Megan Peccarelli; Taylor D Scott; Bessie W Kebaara
Journal:  FEBS Lett       Date:  2019-07-30       Impact factor: 4.124

3.  PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.

Authors:  Lisa-Marie Appel; Vedran Franke; Melania Bruno; Irina Grishkovskaya; Aiste Kasiliauskaite; Tanja Kaufmann; Ursula E Schoeberl; Martin G Puchinger; Sebastian Kostrhon; Carmen Ebenwaldner; Marek Sebesta; Etienne Beltzung; Karl Mechtler; Gen Lin; Anna Vlasova; Martin Leeb; Rushad Pavri; Alexander Stark; Altuna Akalin; Richard Stefl; Carrie Bernecky; Kristina Djinovic-Carugo; Dea Slade
Journal:  Nat Commun       Date:  2021-10-19       Impact factor: 14.919

4.  RNA Microarray-Based Comparison of Innate Immune Phenotypes between Human THP-1 Macrophages Stimulated with Two BCG Strains.

Authors:  Gabriela Molina-Olvera; Claudia I Rivas-Ortiz; Alejandro Schcolnik-Cabrera; Antonia I Castillo-Rodal; Yolanda López-Vidal
Journal:  Int J Mol Sci       Date:  2022-04-20       Impact factor: 6.208

5.  Feedback to the central dogma: cytoplasmic mRNA decay and transcription are interdependent processes.

Authors:  Ella Hartenian; Britt A Glaunsinger
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-10-27       Impact factor: 8.250

6.  Recruitment of Xrn1 to stress-induced genes allows efficient transcription by controlling RNA polymerase II backtracking.

Authors:  José García-Martínez; María E Pérez-Martínez; José E Pérez-Ortín; Paula Alepuz
Journal:  RNA Biol       Date:  2020-12-15       Impact factor: 4.652

7.  Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae.

Authors:  Koji Kasahara; Risa Nakayama; Yuh Shiwa; Yu Kanesaki; Taichiro Ishige; Hirofumi Yoshikawa; Tetsuro Kokubo
Journal:  PLoS Genet       Date:  2020-06-30       Impact factor: 5.917

8.  Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability.

Authors:  Jessica L Feldman; Craig L Peterson
Journal:  Cell Rep       Date:  2019-06-04       Impact factor: 9.423

9.  DOT1L complex regulates transcriptional initiation in human erythroleukemic cells.

Authors:  Aiwei Wu; Junhong Zhi; Tian Tian; Ali Cihan; Murat A Cevher; Ziling Liu; Yael David; Tom W Muir; Robert G Roeder; Ming Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-06       Impact factor: 12.779

10.  The CCR4-NOT complex maintains liver homeostasis through mRNA deadenylation.

Authors:  Akinori Takahashi; Toru Suzuki; Shou Soeda; Shohei Takaoka; Shungo Kobori; Tomokazu Yamaguchi; Haytham Mohamed Aly Mohamed; Akiko Yanagiya; Takaya Abe; Mayo Shigeta; Yasuhide Furuta; Keiji Kuba; Tadashi Yamamoto
Journal:  Life Sci Alliance       Date:  2020-04-01
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