Literature DB >> 30289505

Selection of Reference Genes for Optimal Normalization of Quantitative Real-Time Polymerase Chain Reaction Results for Diaphorina citri Adults.

Shuying Bin1, Xinhua Pu1, Benshui Shu1, Cong Kang1, Shaoming Luo1, Yu Tang1, Zhongzhen Wu1, Jintian Lin1.   

Abstract

The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Liviidae), can cause direct damage to citrus trees and is the main vector for the devastating disease, citrus greening disease or huanglongbing. Most molecular studies on this important insect pest use real-time reverse-transcription quantitative polymerase chain reaction (RT-qPCR) to quantify gene expression, including analyzing molecular basis for insecticide resistance in field populations. One critical factor to cause inaccuracy in RT-qPCR results is the lack of appropriate internal reference genes for optimal data normalization. In this study, the expression levels of 10 selected reference genes were evaluated in different tissue samples of psyllid adults and in the insects treated with different temperatures and insecticides. Data were analyzed using different computational algorithms, including Delta Ct, BestKeeper, NormFinder, geNorm, and RefFinder. According to our results, at least two reference genes should be used for the normalization of RT-qPCR data in this insect. The best choices of reference genes for different samples are as follows: ACT1 and Ferritin for different tissue samples, RPS20 and Ferritin for samples treated with different temperatures, TBP and EF1α for samples treated with imidacloprid, and Ferritin and TBP for samples treated with beta-cypermethrin. The reference genes identified in this study should be useful for future studies to analyze the expression patterns of target genes, especially for genes linked with temperature adaptability and insecticide resistance in this insect species in the future.

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Year:  2019        PMID: 30289505     DOI: 10.1093/jee/toy297

Source DB:  PubMed          Journal:  J Econ Entomol        ISSN: 0022-0493            Impact factor:   2.381


  6 in total

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Authors:  Damini Jaiswal; V Kavi Sidharthan; Susheel Kumar Sharma; Richa Rai; Nandlal Choudhary; Amalendu Ghosh; Virendra Kumar Baranwal
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2.  Optimal reference genes for gene expression analysis in polyploid of Cyprinus carpio and Carassius auratus.

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Journal:  BMC Genet       Date:  2020-09-17       Impact factor: 2.797

3.  Effect of Nitrogen Sources on Omega-3 Polyunsaturated Fatty Acid Biosynthesis and Gene Expression in Thraustochytriidae sp.

Authors:  Siting Li; Zhangli Hu; Xuewei Yang; Yan Li
Journal:  Mar Drugs       Date:  2020-12-01       Impact factor: 5.118

4.  Genome-Wide Identification and Characterization of Toll-like Receptors (TLRs) in Diaphorina citri and Their Expression Patterns Induced by the Endophyte Beauveria bassiana.

Authors:  Luis Carlos Ramos Aguila; Hafiza Javaira Ashraf; Jessica Paola Sánchez Moreano; Komivi Senyo Akutse; Bamisope Steve Bamisile; Liuyang Lu; Xiaofang Li; Jingyi Lin; Qing Wu; Liande Wang
Journal:  J Fungi (Basel)       Date:  2022-08-22

5.  De Novo Assembly of the Asian Citrus Psyllid Diaphorina citri (Hemiptera: Psyllidae) Transcriptome across Developmental Stages.

Authors:  Chunxiao Yang; Da Ou; Wei Guo; Jing Lü; Changfei Guo; Baoli Qiu; Huipeng Pan
Journal:  Int J Mol Sci       Date:  2020-07-14       Impact factor: 5.923

6.  Comprehensive Assessment of Candidate Reference Genes for Gene Expression Studies Using RT-qPCR in Tamarixia radiata, a Predominant Parasitoid of Diaphorina citri.

Authors:  Chang-Fei Guo; Hui-Peng Pan; Li-He Zhang; Da Ou; Zi-Tong Lu; Muhammad Musa Khan; Bao-Li Qiu
Journal:  Genes (Basel)       Date:  2020-10-10       Impact factor: 4.096

  6 in total

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