Literature DB >> 3028472

Carbon-13 and deuterium isotope effects on oxalacetate decarboxylation by pyruvate carboxylase.

P V Attwood, P A Tipton, W W Cleland.   

Abstract

Deuterium and 13C isotope effects for the enzymic decarboxylation of oxalacetate showed that both deuterium- and 13C-sensitive steps in the reaction are partially rate limiting. A normal alpha-secondary effect of 1.2 per deuterium was calculated for the reaction in which pyruvate-d3 was the substrate, suggesting that the enolate of pyruvate was an intermediate in the reaction. The large normal alpha-secondary deuterium isotope effect of 1.7 when oxalacetate-d2 was the substrate suggests that the motions of the secondary hydrogens are coupled to that of the primary hydrogen during the protonation of the enolate of pyruvate. The reduction in the magnitude of the 13C isotope effect for the oxamate-dependent decarboxylation of oxalacetate from 1.0238 to 1.0155 when the reaction was performed in D2O (primary deuterum isotope effect = 2.1) clearly indicates that the transfer of the proton and carboxyl group between biotin and pyruvate does not occur via a single concerted reaction. Mechanisms in which biotin is activated to react with CO2 (prior to transfer of the proton on N-1) by bond formation between the sulfur and the ureido carbon, or in which the sequence of events is decarboxylation of oxalacetate, proton transfer from biotin to enolpyruvate, and carboxylation of enolbiotin, predict that the 13C isotope effect in D2O should be substantially lower than the observed value. A stepwise mechanism that does fit the data is one in which a proton is removed from biotin by a sulfhydryl group on the enzyme prior to carboxyl transfer, as long as the sulfhydryl group has an abnormally low pK.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1986        PMID: 3028472     DOI: 10.1021/bi00373a012

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

Review 1.  Structure, function and regulation of pyruvate carboxylase.

Authors:  S Jitrapakdee; J C Wallace
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  Probing the catalytic roles of Arg548 and Gln552 in the carboxyl transferase domain of the Rhizobium etli pyruvate carboxylase by site-directed mutagenesis.

Authors:  Saowapa Duangpan; Sarawut Jitrapakdee; Abdussalam Adina-Zada; Lindsay Byrne; Tonya N Zeczycki; Martin St Maurice; W Wallace Cleland; John C Wallace; Paul V Attwood
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

3.  Novel insights into the biotin carboxylase domain reactions of pyruvate carboxylase from Rhizobium etli.

Authors:  Tonya N Zeczycki; Ann L Menefee; Abdussalam Adina-Zada; Sarawut Jitrapakdee; Kathy H Surinya; John C Wallace; Paul V Attwood; Martin St Maurice; W Wallace Cleland
Journal:  Biochemistry       Date:  2011-10-13       Impact factor: 3.162

4.  The role of biotin and oxamate in the carboxyltransferase reaction of pyruvate carboxylase.

Authors:  Adam D Lietzan; Yi Lin; Martin St Maurice
Journal:  Arch Biochem Biophys       Date:  2014-08-23       Impact factor: 4.013

Review 5.  Intramolecular, compound-specific, and bulk carbon isotope patterns in C3 and C4 plants: a review and synthesis.

Authors:  Erik A Hobbie; Roland A Werner
Journal:  New Phytol       Date:  2004-02       Impact factor: 10.151

Review 6.  Structure, mechanism and regulation of pyruvate carboxylase.

Authors:  Sarawut Jitrapakdee; Martin St Maurice; Ivan Rayment; W Wallace Cleland; John C Wallace; Paul V Attwood
Journal:  Biochem J       Date:  2008-08-01       Impact factor: 3.857

7.  Insight into the carboxyl transferase domain mechanism of pyruvate carboxylase from Rhizobium etli.

Authors:  Tonya N Zeczycki; Martin St Maurice; Sarawut Jitrapakdee; John C Wallace; Paul V Attwood; W Wallace Cleland
Journal:  Biochemistry       Date:  2009-05-26       Impact factor: 3.162

8.  A substrate-induced biotin binding pocket in the carboxyltransferase domain of pyruvate carboxylase.

Authors:  Adam D Lietzan; Martin St Maurice
Journal:  J Biol Chem       Date:  2013-05-22       Impact factor: 5.157

9.  Oxamate is an alternative substrate for pyruvate carboxylase from Rhizobium etli.

Authors:  John F Marlier; W W Cleland; Tonya N Zeczycki
Journal:  Biochemistry       Date:  2013-04-18       Impact factor: 3.321

  9 in total

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