Literature DB >> 30277385

Fluorinated Prolines as Conformational Tools and Reporters for Peptide and Protein Chemistry.

Sanne J M Verhoork1, Patrick M Killoran1, Christopher R Coxon1.   

Abstract

Amide bonds at the proline nitrogen are particularly susceptible to rotation, affording cis and trans isomers. Installation of a stereochemically defined electron-withdrawing fluorine atom or fluorinated groups has the power to influence the cis- trans conformational preferences of the amide bond in X-(F)Pro (where X = any other amino acid). Advantageously, this also provides a sensitive reporter for 19F nuclear magnetic resonance (NMR) studies of protein conformation, interactions, and dynamics. We deliberately use the term "fluorinated prolines" as an all-encompassing term to describe proline analogues containing one or more fluorine atoms and to avoid confusion with the more well-known 4-fluoroprolines. This review presents a critical discussion of the growing repertoire of fluorinated prolines that have been described and, importantly, provides a comparison of their uses and relative influence on amide-bond conformation and discusses the significant potential of using 19F NMR as a tool to probe conformational changes in polypeptides.

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Year:  2018        PMID: 30277385     DOI: 10.1021/acs.biochem.8b00787

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

Review 1.  Deciphering the Structure and Formation of Amyloids in Neurodegenerative Diseases With Chemical Biology Tools.

Authors:  Isabelle Landrieu; Elian Dupré; Davy Sinnaeve; Léa El Hajjar; Caroline Smet-Nocca
Journal:  Front Chem       Date:  2022-05-12       Impact factor: 5.545

2.  Activators of the Anticipatory Unfolded Protein Response with Enhanced Selectivity for Estrogen Receptor Positive Breast Cancer.

Authors:  Matthew W Boudreau; Michael P Mulligan; David J Shapiro; Timothy M Fan; Paul J Hergenrother
Journal:  J Med Chem       Date:  2022-01-26       Impact factor: 8.039

3.  Impact of bPNA Backbone Structural Constraints and Composition on Triplex Hybridization with DNA.

Authors:  Oliver Munyaradzi; Sarah Rundell; Dennis Bong
Journal:  Chembiochem       Date:  2022-02-26       Impact factor: 3.461

4.  Optimization of the Linker Domain in a Dimeric Compound that Degrades an r(CUG) Repeat Expansion in Cells.

Authors:  Raphael I Benhamou; Masahito Abe; Shruti Choudhary; Samantha M Meyer; Alicia J Angelbello; Matthew D Disney
Journal:  J Med Chem       Date:  2020-07-13       Impact factor: 7.446

Review 5.  Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement.

Authors:  Vladimir Kubyshkin; Rebecca Davis; Nediljko Budisa
Journal:  Beilstein J Org Chem       Date:  2021-02-15       Impact factor: 2.883

6.  Fluorocyclopropane-Containing Proline Analogue: Synthesis and Conformation of an Item in the Peptide Chemist's Toolbox.

Authors:  Amandine Pons; Jonathan Decaens; Riham Najjar; Nansalmaa Otog; Mathieu Arribat; Sandrine Jolly; Samuel Couve-Bonnaire; Muriel Sebban; Gael Coadou; Hassan Oulyadi; David Speybrouck; Seiji Iwasa; André B Charette; Thomas Poisson; Philippe Jubault
Journal:  ACS Omega       Date:  2022-02-04

7.  Protein Design with Fluoroprolines: 4,4-Difluoroproline Does Not Eliminate the Rate-Limiting Step of Thioredoxin Folding.

Authors:  Jennie O' Loughlin; Silvia Napolitano; Marina Rubini
Journal:  Chembiochem       Date:  2021-10-08       Impact factor: 3.461

8.  Relating Conformational Equilibria to Conformer-Specific Lipophilicities: New Opportunities in Drug Discovery.

Authors:  Bruno Linclau; Zhong Wang; Benjamin Jeffries; Jérôme Graton; Rodrigo J Carbajo; Davy Sinnaeve; Jean-Yves Le Questel; James S Scott; Elisabetta Chiarparin
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-29       Impact factor: 16.823

9.  Unusually high α-proton acidity of prolyl residues in cyclic peptides.

Authors:  Oliver R Maguire; Bethany Taylor; Eleanor M Higgins; Matthew Rees; Steven L Cobb; Nigel S Simpkins; Christopher J Hayes; AnnMarie C O'Donoghue
Journal:  Chem Sci       Date:  2020-07-02       Impact factor: 9.825

Review 10.  Synthesis of complex unnatural fluorine-containing amino acids.

Authors:  William D G Brittain; Carissa M Lloyd; Steven L Cobb
Journal:  J Fluor Chem       Date:  2020-11       Impact factor: 2.050

  10 in total

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