Literature DB >> 30272673

Genome-wide Surveillance of Transcription Errors in Eukaryotic Organisms.

Clark Fritsch1, Jean-Francois Pierre Gout2, Marc Vermulst3.   

Abstract

Accurate transcription is required for the faithful expression of genetic information. Surprisingly though, little is known about the mechanisms that control the fidelity of transcription. To fill this gap in scientific knowledge, we recently optimized the circle-sequencing assay to detect transcription errors throughout the transcriptome of Saccharomyces cerevisiae, Drosophila melanogaster, and Caenorhabditis elegans. This protocol will provide researchers with a powerful new tool to map the landscape of transcription errors in eukaryotic cells so that the mechanisms that control the fidelity of transcription can be elucidated in unprecedented detail.

Entities:  

Mesh:

Year:  2018        PMID: 30272673      PMCID: PMC6235186          DOI: 10.3791/57731

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  21 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation.

Authors:  Maria L Kireeva; Yuri A Nedialkov; Gina H Cremona; Yuri A Purtov; Lucyna Lubkowska; Francisco Malagon; Zachary F Burton; Jeffrey N Strathern; Mikhail Kashlev
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

3.  Frameshift mutants of beta amyloid precursor protein and ubiquitin-B in Alzheimer's and Down patients.

Authors:  F W van Leeuwen; D P de Kleijn; H H van den Hurk; A Neubauer; M A Sonnemans; J A Sluijs; S Köycü; R D Ramdjielal; A Salehi; G J Martens; F G Grosveld; J Peter; H Burbach; E M Hol
Journal:  Science       Date:  1998-01-09       Impact factor: 47.728

4.  Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli.

Authors:  Yan Ning Zhou; Lucyna Lubkowska; Monica Hui; Carolyn Court; Shuo Chen; Donald L Court; Jeffrey Strathern; Ding Jun Jin; Mikhail Kashlev
Journal:  J Biol Chem       Date:  2012-12-05       Impact factor: 5.157

5.  The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae.

Authors:  Jeffrey Strathern; Francisco Malagon; Jordan Irvin; Deanna Gotte; Brenda Shafer; Maria Kireeva; Lucyna Lubkowska; Ding Jun Jin; Mikhail Kashlev
Journal:  J Biol Chem       Date:  2012-12-05       Impact factor: 5.157

6.  Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II.

Authors:  Celine Walmacq; Maria L Kireeva; Jordan Irvin; Yuri Nedialkov; Lucyna Lubkowska; Francisco Malagon; Jeffrey N Strathern; Mikhail Kashlev
Journal:  J Biol Chem       Date:  2009-05-13       Impact factor: 5.157

7.  Transcriptional mutagenesis induced by uracil and 8-oxoguanine in Escherichia coli.

Authors:  Damien Brégeon; Zara A Doddridge; Ho Jin You; Bernard Weiss; Paul W Doetsch
Journal:  Mol Cell       Date:  2003-10       Impact factor: 17.970

8.  A genetic assay for transcription errors reveals multilayer control of RNA polymerase II fidelity.

Authors:  Jordan D Irvin; Maria L Kireeva; Deanna R Gotte; Brenda K Shafer; Ingold Huang; Mikhail Kashlev; Jeffrey N Strathern
Journal:  PLoS Genet       Date:  2014-09-18       Impact factor: 5.917

9.  Accurate RNA consensus sequencing for high-fidelity detection of transcriptional mutagenesis-induced epimutations.

Authors:  Kate S Reid-Bayliss; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-10       Impact factor: 11.205

10.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Authors:  Daehwan Kim; Geo Pertea; Cole Trapnell; Harold Pimentel; Ryan Kelley; Steven L Salzberg
Journal:  Genome Biol       Date:  2013-04-25       Impact factor: 13.583

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.