Literature DB >> 30272358

Identification of key tumorigenesis‑related genes and their microRNAs in colon cancer.

Binbin Xie1, Rongjie Zhao2, Bingjun Bai3, Yuhui Wu2, Yuzi Xu4, Si Lu5, Yong Fang2, Zhanggui Wang6, Ewetse Paul Maswikiti7, Xiaoyun Zhou8, Hongming Pan2, Weidong Han2.   

Abstract

Colorectal cancer (CRC) is one of the most common malignant tumors and its development involves multi‑gene driven processes that affect the digestive system. The objective of this study was to identify tumorigenesis‑associated gene signatures using microarray expression profiling data. The gene expression profiling of GSE39582, a dataset containing 566 colon cancer samples and 19 non‑tumoral colorectal mucosae was downloaded from Gene Expression Omnibus (GEO) database. A total of 439 differentially expressed genes (DEGs) were extracted by GEO2R. Many of these DEGs were cancer‑related, involved in the regulation of cell proliferation, extracellular matrix (ECM)‑receptor interaction and phosphatidylinositol 3‑kinase (PI3K)‑Akt signaling pathway according to the results of pathway enrichment analysis in Database for Annotation, Visualization and Integrated Discovery (DAVID). Then, 10 genes were predicted to play an important role in the development of CRC. Transient receptor potential cation channel, subfamily M, and member 6 (TRPM6), a member of 10 hub genes, was confirmed to be downregulated in 16 (80%) of 20 colon cancer tissues using quantitative polymerase chain reaction (qPCR) technology. Furthermore, high expression of TRPM6 was indicative of a prolonged overall survival (OS) in CRC patients through the analysis of GSE39582. Hsa‑let‑7g and hsa‑let‑7f‑1 were believed to be the regulatory miRNAs of TRPM6 by TCGA and miRanda database. In conclusion, this study may play a critical role in promoting the discovery of potential targets for diagnosis, treatment and prognosis of CRC.

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Year:  2018        PMID: 30272358     DOI: 10.3892/or.2018.6726

Source DB:  PubMed          Journal:  Oncol Rep        ISSN: 1021-335X            Impact factor:   3.906


  17 in total

Review 1.  Targeting Ion Channels for Cancer Treatment: Current Progress and Future Challenges.

Authors:  Alina L Capatina; Dimitris Lagos; William J Brackenbury
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2.  Construction and validation of a novel prediction system for detection of overall survival in lung cancer patients.

Authors:  Cheng Zhong; Yun Liang; Qun Wang; Hao-Wei Tan; Yan Liang
Journal:  World J Clin Cases       Date:  2022-06-26       Impact factor: 1.534

Review 3.  Transient receptor potential (TRP) channels in human colorectal cancer: evidence and perspectives.

Authors:  Theodoros Rizopoulos; Martha Assimakopoulou
Journal:  Histol Histopathol       Date:  2021-02-02       Impact factor: 2.303

Review 4.  Role of the TRP Channels in Pancreatic Ductal Adenocarcinoma Development and Progression.

Authors:  Gonçalo Mesquita; Natalia Prevarskaya; Albrecht Schwab; V'yacheslav Lehen'kyi
Journal:  Cells       Date:  2021-04-26       Impact factor: 6.600

5.  MicroRNA regulation in colorectal cancer tissue and serum.

Authors:  Lukasz Gmerek; Kari Martyniak; Karolina Horbacka; Piotr Krokowicz; Wojciech Scierski; Pawel Golusinski; Wojciech Golusinski; Augusto Schneider; Michal M Masternak
Journal:  PLoS One       Date:  2019-08-30       Impact factor: 3.240

6.  Integrated genomic and methylation profile analysis to identify candidate tumor marker genes in patients with colorectal cancer.

Authors:  Guojun Huang; Wang Cheng; Fu Xi
Journal:  Oncol Lett       Date:  2019-09-04       Impact factor: 2.967

Review 7.  Role of ion channels in gastrointestinal cancer.

Authors:  Kyle J Anderson; Robert T Cormier; Patricia M Scott
Journal:  World J Gastroenterol       Date:  2019-10-14       Impact factor: 5.742

Review 8.  Heterogeneity of Colorectal Cancer Progression: Molecular Gas and Brakes.

Authors:  Federica Gaiani; Federica Marchesi; Francesca Negri; Luana Greco; Alberto Malesci; Gian Luigi de'Angelis; Luigi Laghi
Journal:  Int J Mol Sci       Date:  2021-05-15       Impact factor: 5.923

Review 9.  Calcium Permeable Channels in Cancer Hallmarks.

Authors:  Sendoa Tajada; Carlos Villalobos
Journal:  Front Pharmacol       Date:  2020-07-07       Impact factor: 5.810

10.  Comprehensive Bioinformatics Analysis of mRNA Expression Profiles and Identification of a miRNA-mRNA Network Associated with the Pathogenesis of Low-Grade Gliomas.

Authors:  Ming Wang; Yan Cui; Yang Cai; Yugang Jiang; Yong Peng
Journal:  Cancer Manag Res       Date:  2021-06-29       Impact factor: 3.989

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