Literature DB >> 30271879

Relating DNA base-pairing in aqueous media to DNA polymerase fidelity.

John Petruska1, Myron F Goodman1,2.   

Abstract

Controversy surrounds the perceived absence of a relationship between DNA polymerase fidelity (kinetic discrimination) and free energy changes determined from DNA melting studies (thermodynamic discrimination). Thermodynamic discrimination together with aqueous solvent effects can account for kinetic fidelities on the order of those observed experimentally.

Entities:  

Year:  2017        PMID： 30271879      PMCID： PMC6159950          DOI： 10.1038/s41570-017-0074

Source DB:  PubMed          Journal:  Nat Rev Chem        ISSN： 2397-3358            Impact factor:   34.035


  9 in total

Review 1.  The thermodynamics of DNA structural motifs.

Authors:  John SantaLucia; Donald Hicks
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

2.  Physical rationale behind the nonlinear enthalpy-entropy compensation in DNA duplex stability.

Authors:  E B Starikov; B Nordén
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

Review 3.  Fidelity mechanisms in DNA replication.

Authors:  H Echols; M F Goodman
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

4.  Mechanism of somatic hypermutation at the WA motif by human DNA polymerase η.

Authors:  Ye Zhao; Mark T Gregory; Christian Biertümpfel; Yue-Jin Hua; Fumio Hanaoka; Wei Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

5.  Kinetic selection vs. free energy of DNA base pairing in control of polymerase fidelity.

Authors:  Keriann Oertell; Emily M Harcourt; Michael G Mohsen; John Petruska; Eric T Kool; Myron F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-04       Impact factor: 11.205

6.  Enthalpy-entropy compensation in DNA melting thermodynamics.

Authors:  J Petruska; M F Goodman
Journal:  J Biol Chem       Date:  1995-01-13       Impact factor: 5.157

7.  Locations of frequently opening regions on natural DNAs and their relation to functional loci.

Authors:  O Gotoh; Y Tagashira
Journal:  Biopolymers       Date:  1981-05       Impact factor: 2.505

Review 8.  DNA polymerase fidelity: kinetics, structure, and checkpoints.

Authors:  Catherine M Joyce; Stephen J Benkovic
Journal:  Biochemistry       Date:  2004-11-16       Impact factor: 3.162

9.  The energetic difference between synthesis of correct and incorrect base pairs accounts for highly accurate DNA replication.

Authors:  Andrew C Olson; Jennifer N Patro; Milan Urban; Robert D Kuchta
Journal:  J Am Chem Soc       Date:  2013-01-17       Impact factor: 15.419
  9 in total
  1 in total

1.  A Transition-State Perspective on Y-Family DNA Polymerase η Fidelity in Comparison with X-Family DNA Polymerases λ and β.

Authors:  Keriann Oertell; Jan Florián; Pouya Haratipour; Debbie C Crans; Boris A Kashemirov; Samuel H Wilson; Charles E McKenna; Myron F Goodman
Journal:  Biochemistry       Date:  2019-03-14       Impact factor: 3.162
  1 in total

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