| Literature DB >> 30271839 |
Yoshio Sakai1,2, Masayuki Takamura3,4, Akihiro Seki4, Hajime Sunagozaka1,4, Takeshi Terashima1, Takuya Komura4, Masatoshi Yamato1,4, Masaki Miyazawa4, Kazunori Kawaguchi1, Alessandro Nasti4, Hatsune Mochida4, Soichiro Usui3,4, Nobuhisa Otani4, Takahiro Ochiya5, Takashi Wada2, Masao Honda1, Shuichi Kaneko1,4.
Abstract
INTRODUCTION: Adipose tissue stromal cells contain a substantial number of mesenchymal stem cells. As such, their application to regeneration of miscellaneous impaired organs has attracted much attention.Entities:
Keywords: ADRC, adipose tissue-derived stromal/stem (regenerative) cells; Adipose tissue-derived regenerative cells; HGF, hepatocyte growth factor; IL, interleukin; Liver cirrhosis; MSC, mesenchymal stromal cells; Stem cells; Stromal cells; cADSC, cultured adipose tissue-derived stromal cells
Year: 2017 PMID: 30271839 PMCID: PMC6134901 DOI: 10.1016/j.reth.2016.12.001
Source DB: PubMed Journal: Regen Ther ISSN: 2352-3204 Impact factor: 3.419
Eligibility of enrollment.
Patients diagnosed to be cirrhosis who meets criteria below. Etiology will not be considered, except for unknown etiology. Aged more than 20 years and less than 80 years old. Total bilirubin value: less than or equal to 3.0 mg/dl. Platelet counts: more than or equal to 7.0 × 104/μl. Prothrombin activity: more than or equal to 70%. Serum creatinine level: less than or equal to 1.5 mg/dl. Capable to understand the clinical trial characteristics and give the written informed consents. |
Characteristics of the treated 4 patients.
| Registration number | HI-01 | HI-03 | HI-04 | HI-05 |
|---|---|---|---|---|
| Etiology of cirrhosis | Type C | Type C | NASH | Type B |
| Age (years) | 50's | 30's | 60's | 60's |
| Height (cm) | 162.0 | 163.1 | 163.8 | 155.5 |
| Body weight (Kg) | 66.0 | 67.9 | 87.0 | 63.0 |
| Body mass index | 25.1 | 25.5 | 32.4 | 26.1 |
| Alcohol drinking habit | No | No | No | No |
| The obtained fat volume (ml) | 320 | 150 | 425 | 210 |
| Viability of the obtained cells (%) | 94.5 | 100 | 93.5 | 94.7 |
| Total number of the obtained viable cells | 5.2 × 107 | 2.5 × 109 | 4.5 × 107 | 6.6 × 107 |
| Number of the administered cells | 2.2 × 107 | 2.2 × 107 | 4.4 × 107 | 4.4 × 107 |
| Outcome for the primary endpoint | No serious adverse event | No serious adverse event | No serious adverse event | No serious adverse event |
NASH:non-alcoholic steatohepatitis.
Fig. 1Hemoglobin concentration in peripheral blood of each patient before and after ADRCs administration. Four cirrhotic patients were enrolled in this study. Two patients had type C cirrhosis [(A) HI-01, (B) HI-03], one patient had nonalcoholic steatohepatitis cirrhosis [(C) HI-04], and one patient had type B cirrhosis [(D) HI-05].
Fig. 2Clinical course of serum albumin concentrations and prothrombin activity. (A) HI-01, (B) HI-03, (C) HI-04, and (D) HI-05.
Fig. 3Serum HGF and IL-6 concentrations. Serum was collected from each enrolled patient before and after ADRC treatment. Cytokine concentrations were measured using luminescent-conjugated beads. (A) HGF concentrations and (B) IL-6 concentrations.
Fig. 4Serum interleukin-18, macrophage colony-stimulating factor, and macrophage migration inhibitory factor concentrations. Serum was collected from each enrolled patient before and after ADRC treatment. Cytokines were measured using luminescent-conjugated beads. (A) interleukin-18, (B) macrophage colony-stimulating factor, (C) macrophage migration inhibitory factor concentration.
Fig. 5Microscopic appearance and size of ADRCs and expanded cADSCs. The obtained ADRCs and expanded cADSCs were microscopically observed. Image of them were analyzed for the size by ImageJ software. (A) ADRCs and (B) c ADSCs. (C, D) A histogram of the frequency and diameter of (C) ADRCs and (D) cADSCs. Bars: 100 μm.
Surface antigens expression of the ADRCs.
| Antigen | Registered number | |||
|---|---|---|---|---|
| HI-01 | HI-03 | HI-04 | HI-05 | |
| CD90 | 12.7% | 1.73% | 5.6% | 0.1% |
| CD105 | 1.76% | 0.01% | 0% | 0.2% |
| CD73 | 11.2% | 0.42% | 4.8% | 0.2% |
| CD45 | 3.7% | 0% | 0.6% | 2.5% |
| CD44 | 10.3% | 32.7% | 28.8% | 45.8% |
| CD34 | 8.4% | 0.9% | 6.2% | 0.5% |
| CD31 | 5.6% | 1.9% | 1.5% | 1.2% |
Surface antigens expression of the cultured cADSCs.
| Antigen | Registered number | |||
|---|---|---|---|---|
| HI-01 | HI-03 | HI-04 | HI-05 | |
| CD90 | 96.6% | 86.0% | 37.2% | 43.9% |
| CD105 | 95.5% | 82.9% | 98.2% | 95.3% |
| CD73 | 96.7% | 96.4% | 99.2% | 99.1% |
| CD45 | 0% | 0% | 4.4% | 21.1% |
| CD44 | 80.9% | 96.6% | 98.4% | 98.9% |
| CD34 | 0% | 0.6% | 0.3% | 0.1% |
Fig. 6Lineagepotency of the expanded cADSCs. A fraction of the residually obtained ADRCs was expanded in culture media to obtain cADSCs. (a–c) The expanded cADSCs were further cultured in media supplemented with (A) adipocyte, (B) osteocyte, and (C) chondrocyte differentiation-inducing factors. Anti-FABP-4 (A), anti-Osteoalcin (B), and anti-Aggrecan (C) antibodies were used for imunohisotochemical staining for each differentiation, respectively. The stained cells represented the features as followings; (A) cells with droplets in the cytoplasm, (B) flat and oblong cells, and (C) relatively small and round cells, respectively. Bars: (A, B) 100 μm; (C) 200 μm.
Fig. 7Hierarchical gene expression clustering analysis of peripheral blood, ADRCs, and cADSCs. RNA was extracted from peripheral blood in PAXgene® tubes and from freshly isolated ADRCs and expanded cADSCs. Gene expression data were obtained by DNA microarray and followed by unsupervised hierarchical clustering analysis. (A) Clustering analysis of gene expression data of peripheral blood and ADRCs. (B) Clustering analysis of gene expression data of ADRCs and cADSCs.
Biological processes for up-regulated genes in ADRCs compared to peripheral blood.
| Networks | Total genes | p-Value | FDR | Genes in data | Network objects from active data |
|---|---|---|---|---|---|
| Cytoskeleton_Actin filaments | 176 | 3.61E−11 | 4.65E−09 | 35 | c-Abl, MYH11, Talin, Myosin I, Transgelin, WASF3 (WAVE3), Beta TnTF, ERM proteins, Drebrin, Troponin T, skeletal, MyHC, MYLK1, Gamma-sarcoglycan, Filamin B (TABP), MYH10, Profilin II, Actin, Tropomyosin-1, BPAG1, Calponin-1, Gelsolin, Profilin, MLCK, MRLC, RDX (radixin), Myosin VI, Cofilin, Filamin C, Fascin, Actin muscle, Pacsin, Tropomyosin, Tropomyosin-2, Nephrocystin, FAK1 |
| Development_Skeletal muscle development | 144 | 6.04E−11 | 4.65E−09 | 31 | MYH11, Smooth muscle myosin, Angiotensin II, HB-EGF, Transgelin, Beta TnTF, EGR3, ACTA2, Troponin T, skeletal, MyHC, Gamma-sarcoglycan, VEGF-A, MuRF1, GATA-6, Filamin B (TABP), Actin, Tropomyosin-1, Caveolin-3, MYF6, MRLC, Beta-sarcoglycan, MYRL2, Filamin C, Actin muscle, MKL2(MRTF-B), Tropomyosin, TWIST1, Tropomyosin-2, ITGA11, ACTG2, Collagen IV |
| Development_Ossification and bone remodeling | 157 | 2.63E−09 | 1.35E−07 | 30 | SFRP4, OSF-2, BMP6, TIEG1, HOXA9, Osteonectin, SMAD7, TGF-beta, BMPR1A, Chordin-like 1, TIEG, WNT, SMAD1, Osteopontin, EGFR, Pleiotrophin (OSF1), IGF-2, FOXC1/2, BMP5, BMP7, Osteomodulin, TBX3, FOXC1, IBP, Frizzled, FGFR1, TWIST1, HOXC8, FGFR2, CSF1 |
| Cell adhesion_Integrin-mediated cell-matrix adhesion | 214 | 3.16E−08 | 1.22E−06 | 34 | Tubulin beta, OSF-2, ITGB4, Talin, Lpd, ITGA3, Caveolin-2, Collagen XIV, Fibrillin 1, ERM proteins, LAMA5, ITGB5, Osteonectin, MyHC, Filamin B (TABP), c-Myc, Profilin II, alpha-V/beta-5 integrin, Actin, Osteopontin, Tau (MAPT), Osteomodulin, Profilin, MLCK, MRLC, RDX (radixin), Cofilin, Filamin C, ITGAV, ITGA11, PI3K reg class IA, FAK1, Tetraspanin-8, Collagen IV |
| Development_EMT_Regulation of epithelial-to-mesenchymal transition | 225 | 1.12E−07 | 3.45E−06 | 34 | c-Abl, PDGF receptor, DAB2, HEY1, TGF-beta 2, TGF-beta 3, ACTA2, Jagged1, SMAD7, TGF-beta, WNT, Actin, Tropomyosin-1, SLUG, EGFR, AP-1, JNK(MAPK8-10), PAI1, IGF-2, BMP7, PDGF-D, PDGF-B, Frizzled, FGFR1, LOXL2, Cofilin, MKL2(MRTF-B), TWIST1, PDGF-R-beta, FGFR2, PI3K reg class IA, c-Fos, G-protein alpha-q/11, FAK1 |
| Signal transduction_WNT signaling | 177 | 1.72E−07 | 4.42E−06 | 29 | AKAP12, SFRP4, HB-EGF, Fra-1, LRP5, TGF-beta 2, TGF-beta 3, Matrilysin (MMP-7), HES1, FZD10, PP2A regulatory, SFRP2, VEGF-A, TGF-beta, GATA-6, c-Myc, WNT, SLUG, EGFR, JNK(MAPK8-10), WNT5A, FZD5, Adenylate cyclase, FOXC1, Frizzled, SFRP1, c-Fos, G-protein alpha-q/11, PLC-beta |
| Development_Regulation of angiogenesis | 223 | 2.87E−07 | 6.32E−06 | 33 | Ephrin-A, p21, Angiopoietin 1, Angiotensin II, Leptin receptor, HB-EGF, IL-6, Endoglin, Angiotensin III, DDAH1, Biglycan, TGF-beta 2, Ephrin-A5, Galpha(i)-specific peptide GPCRs, Osteonectin, VEGFR-1, VEGF-A, c-Myc, Ephrin-B, EGFR, Ephrin-A receptors, VEGFR-3, PAI1, Galpha(q)-specific peptide GPCRs, HOXA3, Smoothened, MKL2(MRTF-B), PKC, TRPC1, PI3K reg class IA, G-protein alpha-q/11, Syndecan-3, PLC-beta |
| Development_Neurogenesis_Axonal guidance | 230 | 5.96E−07 | 1.15E−05 | 33 | Ephrin-A, c-Abl, Ephrin-B1, Semaphorin 3C, UNC5B, FEZ1, Netrin-1, ROBO3, Neogenin, Ephrin-A5, ERM proteins, NGFR (ICD), Drebrin, MyHC, NGFR(TNFRSF16), MYH10, Ephrin-B, Actin, Ephrin-A receptors, Ephrin-A receptor 2, PCDHA6, Oligophrenin 1, Syndecan-2, Semaphorin 3B, Semaphorin 3D, Cofilin, Semaphorin 6D, RHO6, PI3K reg class IA, G-protein alpha-q/11, FAK1, PLC-beta, NGFR (CTF) |
| Cell adhesion_Amyloid proteins | 195 | 1.40E−06 | 2.20E−05 | 29 | c-Abl, SFRP4, FZD8, DAB2, alphaAPPs, Amyloid beta, TGF-beta 2, BACE1, SHC3, Jagged1, Nidogen, NGFR (ICD), NGFR(TNFRSF16), Filamin B (TABP), WNT, Actin, WNT5A, APP-C59 (AICD), FZD5, Tau (MAPT), Frizzled, SAA1, Cofilin, ADAM9, PKC, FAK1, APP, Collagen IV, NGFR (CTF) |
| Signal Transduction_TGF-beta, GDF and Activin signaling | 154 | 1.49E−06 | 2.20E−05 | 25 | p21, RPTPkappa, IL-6, DAB2, Endoglin, TGF-beta 2, TGF-beta 3, c-Kit, IRS-1, SARA, PP2A regulatory, SMAD7, c-Myc, EGFR, AP-1, JNK(MAPK8-10), PAI1, MYF6, TGF-beta receptor type III (betaglycan), PKC, TSC-22, c-Fos, FAK1, ALK-1, PLC-beta |
| Cell adhesion_Attractive and repulsive receptors | 175 | 1.57E−06 | 2.20E−05 | 27 | Ephrin-A, c-Abl, Ephrin-B1, Semaphorin 3C, UNC5B, ICAM1, Netrin-1, CHL1, ROBO3, Kalirin, Collagen XIV, Neogenin, Ephrin-A5, AF-6, Ephrin-B, Actin, Ephrin-A receptors, Ephrin-A receptor 2, Tau (MAPT), Collagen XII, Cofilin, Semaphorin 6D, PI3K reg class IA (p55-gamma), RHO6, PI3K reg class IA, FAK1, Collagen IV |
| Cell adhesion_Platelet-endothelium-leucocyte interactions | 174 | 4.54E−06 | 5.82E−05 | 26 | Ephrin-B1, PDGF receptor, ICAM1, IL-6, Endoglin, MAGI-1(BAIAP1), TGF-beta 2, TGF-beta 3, KAL1, ESAM, Protein S, VEGF-A, MSR1, TGF-beta, LDLR, Cathepsin G, JAM3, EGFR, PAI1, PDGF-D, PDGF-B, A2M receptor, CD36, PDGF-R-beta, FAK1, Collagen IV |
| Cell adhesion_Cadherins | 180 | 8.54E−06 | 9.56E−05 | 26 | c-Abl, YES, FHL2, SFRP4, LRP5, ITGA3, DAB2, PTPRF (LAR), Nectin-2, AF-6, DKK2, WNT, Actin, PCDA7, EGFR, BPAG1, WNT5A, PCDHA6, Frizzled, DLG5(P-dlg), PEZ, PKC, K-cadherin (CDH6), Nectin-3, FAK1, Protocadherin 18 |
| Signal transduction_NOTCH signaling | 236 | 8.69E−06 | 9.56E−05 | 31 | p21, PDGF receptor, SFRP4, HB-EGF, FZD8, DAB2, HEY1, TGF-beta 2, TGF-beta 3, HES1, FZD10, Jagged1, SFRP2, VEGF-A, TGF-beta, c-Myc, WNT, EGFR, JNK(MAPK8-10), WNT5A, SFRP3 (FRZB1), FZD5, PDGF-D, PDGF-B, JNK3(MAPK10), Frizzled, MPDZ, SFRP1, PDGF-R-beta, PI3K reg class IA, c-Fos |
| Cytoskeleton_Regulation of cytoskeleton rearrangement | 183 | 1.16E−05 | 1.19E−04 | 26 | Tubulin beta, Talin, RhoGAP6, ERM proteins, Drebrin, MyHC, Gamma-sarcoglycan, Filamin B (TABP), PARD6, Profilin II, Actin, Galpha(i)-specific amine GPCRs, BPAG1, Calponin-1, Gelsolin, Profilin, MLCK, MRLC, RDX (radixin), Beta-sarcoglycan, Cofilin, Filamin C, Actin muscle, PKC, RHO6, FAK1 |
| Muscle contraction | 173 | 1.27E−05 | 1.22E−04 | 25 | K(+) channel, subfamily J, MYH11, Junctin, Smooth muscle myosin, Beta TnTF, ACTA2, Galpha(i)-specific peptide GPCRs, Troponin T, skeletal, MyHC, MuRF1, Actin, Tropomyosin-1, Galpha(q)-specific amine GPCRs, Calponin-1, Kir2.2, Galanin, Galpha(q)-specific prostanoid GPCRs, Galpha(q)-specific peptide GPCRs, MLCK, MRLC, MYRL2, Actin muscle, PKC, Tropomyosin, G-protein alpha-q/11 |
| Reproduction_Feeding and Neurohormone signaling | 211 | 1.38E−04 | 1.25E−03 | 26 | PAM, ITGA3, IL-6, HSP70, Amyloid beta, TGF-beta 2, c-Kit, Galpha(i)-specific peptide GPCRs, PP2A regulatory, TGF-beta, c-Myc, CPEB1, CRF-BP, PAI1, APP-C59 (AICD), Galpha(q)-specific peptide GPCRs, ADAM9, BTEB1, IBP3, PI3K reg class IA, c-Fos, G-protein alpha-q/11, FAK1, Amyloid beta 42, APP, PLC-beta |
| Cardiac development_BMP_TGF_beta_signaling | 117 | 2.92E−04 | 2.49E−03 | 17 | MYH11, BMP6, FGF12, Endoglin, TGF-beta 2, TGF-beta 3, MyHC, SMAD7, BMPR1A, MYH10, SMAD1, SLUG, BMP7, FOXC1, TGF-beta receptor type III (betaglycan), MKL2(MRTF-B), PDLIM3 |
| Development_Blood vessel morphogenesis | 228 | 4.78E−04 | 3.88E−03 | 26 | Angiopoietin 1, G-protein alpha-11, HB-EGF, ICAM1, HEY1, PDE, Jagged1, PDE9A, Galpha(i)-specific peptide GPCRs, VEGFR-1, VEGF-A, c-Myc, EGFR, Galpha(q)-specific amine GPCRs, Galpha(i)-specific amine GPCRs, VEGFR-3, FOXC1/2, Galpha(q)-specific peptide GPCRs, FOXC1, Angiopoietin 2, FGFR1, TRPC1, PI3K reg class IA, c-Fos, G-protein alpha-q/11, Transferrin |
| Reproduction_FSH-beta signaling pathway | 160 | 6.71E−04 | 5.17E−03 | 20 | TGF-beta 2, PBX1, IRS-1, PP2A regulatory, VEGF-A, c-Myc, SMAD1, EGFR, AP-1, Adenylate cyclase, IBP, TGF-beta receptor type III (betaglycan), PBX, CREM (activators), CREM (repressors), PBX1/PREP2, IBP3, PI3K reg class IA, c-Fos, PBX1a/HOXA10 |
Biological processes for up-regulated genes in ADRCs compared to cADSCs.
| Networks | Total genes | p-Value | FDR | Genes in data | Network objects from active data |
|---|---|---|---|---|---|
| Immune response_Antigen presentation | 197 | 2.10128E−13 | 3.04686E−11 | 39 | CD8 alpha, CIITA, STAT3, ITGAM, CD8, ICAM1, MHC class II beta chain, CD28, HSP70, ICOS, HLA-DQA1, KLRK1 (NKG2D), alpha-L/beta-2 integrin, HA2Z, HLA-DM, HLA-DRB1, ITGAL, ICAM2, NKG2A, Cathepsin S, CD3 gamma, MHC class II, KLRC4 (NKG2F), HLA-DQB1, CD3 zeta, HLA-DRA1, CD2, HLA-DPB1, CD3 delta, HLA-DRB4, CD86, CEACAM1, IFN-gamma, CD74, CD8 beta, CD209, RING6, alpha-M/beta-2 integrin, TNF-alpha |
| Cell adhesion_Leucocyte chemotaxis | 205 | 8.02086E−13 | 5.81512E−11 | 39 | CCL5, ITGB2, ITGAM, ICAM1, GRO-2, CD28, CCL2, ZAP70, CCL14, alpha-L/beta-2 integrin, MIP-1-beta, CCL23, Galpha(i)-specific peptide GPCRs, MIG, ITGAL, ICAM2, IL-8, SKAP55, MHC class II, PLC-gamma 2, ITK, Btk, CXCL16, G-protein alpha-i family, CD2, CX3CR1, Lymphotactin, Lck, Galpha(q)-specific peptide GPCRs, CD86, VAV-1, CXCR4, PLC-gamma, CALDAG-GEFI, SLAP-130(ADAP), CCR7, IP10, CCL13, alpha-M/beta-2 integrin |
| Chemotaxis | 137 | 1.75407E−12 | 8.47803E−11 | 31 | CCL5, ITGB2, Syk, XCL2, C5aR, GRO-2, Prokineticin 2, CCL2, KAL1, alpha-L/beta-2 integrin, MIP-1-beta, alpha-X/beta-2 integrin, CCL23, Galpha(i)-specific peptide GPCRs, MIG, Integrin, IL-8, CCL8, Osteopontin, CXCL16, G-protein alpha-i family, CX3CR1, Lymphotactin, Lck, Galpha(q)-specific peptide GPCRs, IL-16, FPR, CCR7, IP10, CCL13, alpha-M/beta-2 integrin |
| Cell adhesion_Platelet-endothelium-leucocyte interactions | 174 | 1.12476E−09 | 4.07727E−08 | 31 | ITGAX, CCL5, LEKTI, ITGB2, CD84, IL-18, ITGAM, ICAM1, CCL2, JAM1, KAL1, alpha-L/beta-2 integrin, alpha-X/beta-2 integrin, ITGAL, CD34, ESAM, SREC-I, MSR1, IL-8, Cathepsin G, PZP, PECAM1, P-selectin, von Willebrand factor, VEGFR-2, SHP-1, PDGF-B, CD36, alpha-M/beta-2 integrin, Thrombospondin 4, TNF-alpha |
| Immune response_Phagocytosis | 222 | 2.7911E−09 | 8.09419E−08 | 35 | ITGB2, Syk, Myosin I, MELC, Fc gamma RII beta, alpha-X/beta-2 integrin, MyHC, C3, MSR1, CORO1A(CLABP, TACO), Lyn, PLC-gamma 2, Btk, C3b, Hck, Gelsolin, MARCO, SHP-1, VAV-1, iC3b, Fc epsilon RI beta, PLC-gamma, gp91-phox, C3dg, p47-phox, p40-phox, SLAP-130(ADAP), PI3K reg class IA (p55-gamma), p67-phox, CD14, FGR, ELMO1, alpha-M/beta-2 integrin, PI3K reg class IA, Fc gamma RII alpha |
| Inflammation_Complement system | 74 | 4.19219E−09 | 1.01311E−07 | 19 | ITGAX, ITGB2, ITGAM, C5aR, Ficolin, C7, Factor H, alpha-X/beta-2 integrin, C6, Properdin, C3a, C3, L-Ficolin, C3b, iC3b, C1qRp, C3dg, alpha-M/beta-2 integrin, H-Ficolin |
| Inflammation_TREM1 signaling | 145 | 9.53854E−08 | 1.97584E−06 | 25 | ITGAX, ITGB2, Syk, ITGAM, ICAM1, IRF8, CCL2, ZAP70, Matrilysin (MMP-7), IL-8, Nod2 (CARD15), PLC-gamma 2, CD83, DAP12, CD86, IFN-gamma, PLC-gamma, TLR2, WBSCR5(NTAL), PI3K reg class IA (p55-gamma), CD14, MEF2C, PI3K reg class IA, TREM2, TNF-alpha |
| Immune response_Phagosome in antigen presentation | 243 | 9.93211E−07 | 1.8002E−05 | 32 | Syk, HSP70, HLA-DQA1, A2M, C3, Cathepsin S, Lyn, MHC class II, PLC-gamma 2, HLA-DQB1, Btk, HLA-DRA1, Hck, Gelsolin, HLA-DPB1, SHP-1, HLA-DRB4, VAV-1, iC3b, Fc epsilon RI beta, PLC-gamma, CD74, FPR, C3dg, SLAP-130(ADAP), PI3K reg class IA (p55-gamma), CD14, FGR, ELMO1, alpha-M/beta-2 integrin, PI3K reg class IA, Fc gamma RII alpha |
| Inflammation_Histamine signaling | 213 | 1.64374E−06 | 2.64826E−05 | 29 | CCL5, IL-18, PLA2, ICAM1, IRF8, BETA-PIX, CCL2, Guanylate cyclase, Guanylate cyclase alpha, MIP-1-beta, Guanylate cyclase A (NPR1), IL-8, PLC-gamma 2, P-selectin, HDC, GUCY1A3, G-protein alpha-i family, IGHG1, CD86, IFN-gamma, PLC-gamma, LTC4S, gp91-phox, p47-phox, p40-phox, p67-phox, CD14, IP10, TNF-alpha |
| Inflammation_NK cell cytotoxicity | 164 | 3.7358E−06 | 5.41691E−05 | 24 | Syk, ICAM1, EAT-2, ZAP70, KLRK1 (NKG2D), alpha-L/beta-2 integrin, NKp30, ICAM2, NKG2A, KLRC4 (NKG2F), PLC-gamma 2, CD3 zeta, DAP12, CD2, Granzyme B, SHP-1, Lck, Perforin, IFN-gamma, PLC-gamma, Apo-2L(TNFSF10), Serglycin, DAP10, TNF-alpha |
| Inflammation_Neutrophil activation | 215 | 6.02147E−06 | 7.90026E−05 | 28 | ITGB2, STAT3, ITGAM, C5aR, PLA2, ICAM1, GRO-2, CCL2, TNF-R2, Galpha(i)-specific peptide GPCRs, ICAM2, IL-8, P-selectin, Btk, G-protein alpha-15, G-protein alpha-i family, CX3CR1, VAV-1, IFN-gamma, FPR, gp91-phox, p40-phox, PI3K reg class IA (p55-gamma), p67-phox, alpha-M/beta-2 integrin, PI3K reg class IA, Ryanodine receptor 1, TNF-alpha |
| Cell adhesion_Platelet aggregation | 158 | 6.53814E−06 | 7.90026E−05 | 23 | ITGB2, Syk, PLA2, MELC, PAR4, ZAP70, MyHC, THAS, Lyn, Cathepsin G, PECAM1, PLC-gamma 2, P-selectin, G-protein alpha-z, von Willebrand factor, G-protein alpha-i family, VAV-1, PLA2G7, PLC-gamma, CD36, CALDAG-GEFI, PI3K reg class IA (p55-gamma), PI3K reg class IA |
| Immune response_TCR signaling | 174 | 1.0605E−05 | 0.000118287 | 24 | CD8 alpha, ITGB2, CD8, ICAM1, CD28, ICOS, ZAP70, alpha-L/beta-2 integrin, ICAM2, SKAP55, CD3 gamma, MHC class II, CD3 zeta, ITK, SHP-1, CD3 delta, Lck, CD86, VAV-1, IFN-gamma, CD8 beta, SLAP-130(ADAP), PI3K reg class IA, TNF-alpha |
| Inflammation_IL-4 signaling | 115 | 2.46593E−05 | 0.0002554 | 18 | CCL2, HLA-DQA1, IL-8, MHC class II, HLA-DQB1, HLA-DRA1, HLA-DPB1, SHP-1, HLA-DRB4, IGHG1, CD86, Fc epsilon RI beta, CD74, DOK2, SHIP, CCL13, PI3K reg class IA, Fc gamma RII alpha |
| Inflammation_Interferon signaling | 110 | 4.8939E−05 | 0.00045454 | 17 | CIITA, CCL5, STAT3, IRF1, ICAM1, IRF8, CCL2, MIP-1-beta, MIG, CCL8, SHP-1, IL18RAP, CD86, SOCS3, IFN-gamma, Apo-2L(TNFSF10), SERPINB9 |
| Development_Blood vessel morphogenesis | 228 | 5.01561E−05 | 0.00045454 | 27 | LEKTI, STAT3, HB-EGF, ICAM1, Prokineticin 2, Alpha-1B adrenergic receptor, PDE, PDE9A, Galpha(i)-specific peptide GPCRs, Lactoferrin, Galpha(q)-specific nucleotide-like GPCRs, VEGFR-1, Guanylate cyclase A (NPR1), Epiregulin, Endomucin, TIE2, Galpha(q)-specific amine GPCRs, Ceruloplasmin, VEGFR-3, VEGFR-2, G-protein alpha-i family, Galpha(q)-specific peptide GPCRs, CEACAM1, CXCR4, ROBO4, DOK2, PI3K reg class IA |
| Inflammation_Innate inflammatory response | 180 | 5.61052E−05 | 0.000478544 | 23 | STAT3, IL-18, C5aR, PLA2, Beta-defensin 1, C7, TLR1, C6, TLR5, C3a, C3, IL-8, PLC-gamma 2, Btk, C3b, G-protein alpha-15, G-protein alpha-i family, sCD14, PLC-gamma, TLR2, CD14, IP10, TNF-alpha |
| Muscle contraction | 173 | 8.74525E−05 | 0.000704479 | 22 | MYH11, Smooth muscle myosin, KCNAB1, MELC, Phospholamban, Beta TnTF, Galpha(i)-specific peptide GPCRs, HRC, Troponin T, skeletal, IPP-1, MyHC, Guanylate cyclase A (NPR1), Titin, KCNQ1, MYL4, Galpha(q)-specific amine GPCRs, G-protein alpha-i family, Galpha(q)-specific peptide GPCRs, Kv2.1, PKC, Troponin I, fast skeletal muscle, Ryanodine receptor 1 |
| Inflammation_Amphoterin signaling | 118 | 0.000386616 | 0.00295049 | 16 | ITGB2, ITGAM, Calgranulin A, ICAM1, MELC, CCL2, MyHC, Calgranulin B, IL-8, Calgranulin C, IL1RN, TLR2, PI3K reg class IA (p55-gamma), alpha-M/beta-2 integrin, PI3K reg class IA, TNF-alpha |
| Proliferation_Lymphocyte proliferation | 209 | 0.000530476 | 0.003684745 | 23 | CCL5, STAT3, Syk, IL-18, IL10RA, BST2, CD28, ICOS, ZAP70, MIP-1-beta, TNF-R2, CD33, CD30(TNFRSF8), OX40(TNFRSF4), SHP-1, CD86, VAV-1, CD70(TNFSF7), CXCR4, DOK2, EBI3, PI3K reg class IA, TNF-alpha |
Biological processes for up-regulated genes in cADSCs compared to ADRCs.
| Networks | Total gees | p-Value | FDR | Genes in data | Network objects from active data |
|---|---|---|---|---|---|
| Development_Cartilage development | 66 | 7.01E−05 | 0.006166 | 6 | Fibronectin, VDR, ROR2, Activin beta A, RUNX2, Fibrillin |
| Development_Neurogenesis in general | 192 | 0.000202 | 0.008844 | 9 | Frizzled, Galpha(q)-specific amine GPCRs, FZD2, Adenosine A1 receptor, Activin beta A, SERPINE2, WNT, GDNF, ARNT2 |
| Reproduction_FSH-beta signaling pathway | 160 | 0.000301 | 0.008844 | 8 | PSG13, SCCA-1, PSG-5, ROR2, Activin beta A, PSG6, PSG1, PSG11 |
| Cell adhesion_Cell-matrix interactions | 211 | 0.000408 | 0.008969 | 9 | Fibronectin, Tenascin-C, MMP-1, Stromelysin-1, Fibrillin 2, Layilin, Fibrillin, LAMA1, Thrombospondin 1 |
| Development_Ossification and bone remodeling | 157 | 0.001436 | 0.025274 | 7 | Frizzled, Activin, HOXC8, RUNX2, Osteoprotegerin, Cadherin 11, WNT |
| Proteolysis_Connective tissue degradation | 119 | 0.008978 | 0.124094 | 5 | Fibronectin, Tenascin-C, SERPINE2, MMP-1, Stromelysin-1 |
| Development_Neurogenesis_Synaptogenesis | 180 | 0.012735 | 0.124094 | 6 | Frizzled, Nav1.6, Liprin-alpha4, Thrombospondin 1, WNT, Thrombospondin 2 |
| Cell adhesion_Cadherins | 180 | 0.012735 | 0.124094 | 6 | SSX2IP, Frizzled, STMN2, DKK1, Cadherin 11, WNT |
| Proteolysis_ECM remodeling | 85 | 0.013084 | 0.124094 | 4 | Fibronectin, Tenascin-C, MMP-1, Stromelysin-1 |
| Inflammation_IL-13 signaling pathway | 91 | 0.016458 | 0.124094 | 4 | Tenascin-C, IL13RA2, SCCA-1, SCCA-2 |
| Signal Transduction_BMP and GDF signaling | 91 | 0.016458 | 0.124094 | 4 | Gremlin, ROR2, HOXC8, RUNX2 |
| Cell adhesion_Amyloid proteins | 195 | 0.018264 | 0.124094 | 6 | Fibronectin, Frizzled, FZD2, F-spondin, WNT5B, WNT |
| Blood coagulation | 94 | 0.018332 | 0.124094 | 4 | SERPINE2, MMP-1, PAR3, Thrombospondin 1 |
| Cardiac development_Wnt_beta-catenin, Notch, VEGF, IP3 and integrin signaling | 150 | 0.022508 | 0.141479 | 5 | Frizzled, SALL4, DKK1, Thrombospondin 1, WNT |
| Reproduction_Progesterone signaling | 214 | 0.027392 | 0.160698 | 6 | Fibronectin, Frizzled, KIBRA, Galpha(q)-specific peptide GPCRs, WNT, Pitx2 |
| Signal transduction_WNT signaling | 177 | 0.041679 | 0.229236 | 5 | Fibronectin, Frizzled, FZD2, WNT5B, WNT |
| Neurophysiological process_Transmission of nerve impulse | 212 | 0.077966 | 0.393232 | 5 | HTR2A, Glycine receptor beta chain, MaxiK alpha subunit, GluR3, Serotonin receptor |
| Cell adhesion_Integrin-mediated cell-matrix adhesion | 214 | 0.080434 | 0.393232 | 5 | Fibronectin, Tubulin beta 3, Tenascin-C, Tubulin beta, TM4SF9 |
| Muscle contraction | 173 | 0.115956 | 0.518155 | 4 | Galpha(q)-specific amine GPCRs, MaxiK alpha subunit, Galpha(q)-specific peptide GPCRs, Thrombospondin 1 |
| Cell adhesion_Platelet-endothelium-leucocyte interactions | 174 | 0.117762 | 0.518155 | 4 | Fibronectin, SERPINE2, Thrombospondin 1, Thrombospondin 2 |