Literature DB >> 30264890

Caenorhabditis elegans DLC-1 associates with ribonucleoprotein complexes to promote mRNA regulation.

Nicholas J Day1, Mary Ellenbecker1, Ekaterina Voronina1.   

Abstract

Ribonucleoprotein complexes, which contain mRNAs and their regulator proteins, carry out post-transcriptional control of gene expression. The function of many RNA-binding proteins depends on their association with cofactors. Here, we use a genomic approach to identify transcripts associated with DLC-1, a protein previously identified as a cofactor of two unrelated RNA-binding proteins that act in the Caenorhabditis elegans germline. Among the 2732 potential DLC-1 targets, most are germline mRNAs associated with oogenesis. Removal of DLC-1 affects expression of its targets expressed in the oocytes, meg-1 and meg-3. We propose that DLC-1 acts as a cofactor for multiple ribonucleoprotein complexes, including the ones regulating gene expression during oogenesis.
© 2018 Federation of European Biochemical Societies.

Entities:  

Keywords:  LC8; RNA-binding protein; germline; oogenesis

Mesh:

Substances:

Year:  2018        PMID: 30264890      PMCID: PMC6263831          DOI: 10.1002/1873-3468.13259

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  56 in total

1.  Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1.

Authors:  David Bernstein; Brad Hook; Ashwin Hajarnavis; Laura Opperman; Marvin Wickens
Journal:  RNA       Date:  2005-04       Impact factor: 4.942

Review 2.  Introduction to germ cell development in Caenorhabditis elegans.

Authors:  Nanette Pazdernik; Tim Schedl
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

3.  The P granule component PGL-1 promotes the localization and silencing activity of the PUF protein FBF-2 in germline stem cells.

Authors:  Ekaterina Voronina; Alexandre Paix; Geraldine Seydoux
Journal:  Development       Date:  2012-10       Impact factor: 6.868

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  A role for dynein in the inhibition of germ cell proliferative fate.

Authors:  Maia Dorsett; Tim Schedl
Journal:  Mol Cell Biol       Date:  2009-09-14       Impact factor: 4.272

6.  Drosophila Dynein light chain (DDLC1) binds to gurken mRNA and is required for its localization.

Authors:  Inna Rom; Alice Faicevici; Orna Almog; F Shira Neuman-Silberberg
Journal:  Biochim Biophys Acta       Date:  2007-05-18

7.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

Review 8.  Regulatory roles of RNA binding proteins in the nervous system of C. elegans.

Authors:  Panid Sharifnia; Yishi Jin
Journal:  Front Mol Neurosci       Date:  2015-01-12       Impact factor: 5.639

9.  Cell-nonautonomous inhibition of radiation-induced apoptosis by dynein light chain 1 in Caenorhabditis elegans.

Authors:  T H Morthorst; A Olsen
Journal:  Cell Death Dis       Date:  2013-09-12       Impact factor: 8.469

10.  Genomic Analyses of Sperm Fate Regulator Targets Reveal a Common Set of Oogenic mRNAs in Caenorhabditis elegans.

Authors:  Daniel C Noble; Scott T Aoki; Marco A Ortiz; Kyung Won Kim; Jamie M Verheyden; Judith Kimble
Journal:  Genetics       Date:  2015-11-12       Impact factor: 4.562

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  3 in total

1.  Dynein Light Chain DLC-1 Facilitates the Function of the Germline Cell Fate Regulator GLD-1 in Caenorhabditis elegans.

Authors:  Mary Ellenbecker; Emily Osterli; Xiaobo Wang; Nicholas J Day; Ella Baumgarten; Benjamin Hickey; Ekaterina Voronina
Journal:  Genetics       Date:  2018-12-03       Impact factor: 4.562

2.  In Situ Detection of Ribonucleoprotein Complex Assembly in the C. elegans Germline using Proximity Ligation Assay.

Authors:  Nicholas J Day; Xiaobo Wang; Ekaterina Voronina
Journal:  J Vis Exp       Date:  2020-05-05       Impact factor: 1.355

3.  DLC-1 facilitates germ granule assembly in Caenorhabditis elegans embryo.

Authors:  Nicholas J Day; Mary Ellenbecker; Xiaobo Wang; Ekaterina Voronina
Journal:  Mol Biol Cell       Date:  2022-03-11       Impact factor: 3.612

  3 in total

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