Literature DB >> 30259355

Online Databases and Circular RNAs.

Seyed Hamid Aghaee-Bakhtiari1,2.   

Abstract

circRNAs are a novel class of ncRNAs that unlike other ncRNAs are not linear and have a circular structure. These valuable ncRNAs have been detected in a wide range of organisms from plants to animals and in all cell lines and tissues. Commonly, circRNAs have several functions as gene expression regulation at transcriptional or posttranscriptional level, miRNA partnership, and splicing intercede. Currently, circRNAs are roughly remarked in a widespread collection of diseases, and circRNAs simply can be recognized in liquid samples for disease detection and progression assessment. Considering these features of circRNAs, these molecules are evolving the impeccable collection of original biomarkers for disease therapy and diagnosis. As the critical role of these molecules in different aspects medicine and biology, circRNAs are considered as key and critical class of ncRNA in the current ncRNA search field. To simplify the assessment of diverse features of circRNAs, several databases have been established such as circBase, CircInteractome, CircNet, Circ2Traits, CircR2Disease, TCSD, and CSCD. In this chapter, we have an overview on these main circRNA databases and introduce key features of each database.

Entities:  

Keywords:  Online databases; Online resources; Web-accessible databases; circRNA

Mesh:

Substances:

Year:  2018        PMID: 30259355     DOI: 10.1007/978-981-13-1426-1_3

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  8 in total

Review 1.  An update on the roles of circular RNAs in spinal cord injury.

Authors:  Xuezhen Ma; Xuesong Wang; Xuexiao Ma; Xiugong Zhang; Xiaojin Gong; Ruifu Sun; Sunny H Wong; Matthew T V Chan; William Ka Kei Wu
Journal:  Mol Neurobiol       Date:  2022-02-03       Impact factor: 5.590

Review 2.  Disease-Associated Circular RNAs: From Biology to Computational Identification.

Authors:  Min Tang; Ling Kui; Guanyi Lu; Wenqiang Chen
Journal:  Biomed Res Int       Date:  2020-08-17       Impact factor: 3.411

Review 3.  Circular RNAs in Muscle Function and Disease.

Authors:  Simona Greco; Beatrice Cardinali; Germana Falcone; Fabio Martelli
Journal:  Int J Mol Sci       Date:  2018-11-03       Impact factor: 5.923

4.  Dysregulated circular RNAs as novel biomarkers in esophageal squamous cell carcinoma: a meta-analysis.

Authors:  Chengcheng Guo; Jianqiang Mi; Haike Li; Panke Su; He Nie
Journal:  Cancer Med       Date:  2021-10-26       Impact factor: 4.452

5.  HIF1α-SP1 interaction disrupts the circ-0001875/miR-31-5p/SP1 regulatory loop under a hypoxic microenvironment and promotes non-small cell lung cancer progression.

Authors:  Dong Wu; Tingting Chen; Xuanna Zhao; Dan Huang; Jiawei Huang; Yujie Huang; Qiu Huang; Zhu Liang; Chunyuan Chen; Min Chen; Dongming Li; Bin Wu; Lixia Li
Journal:  J Exp Clin Cancer Res       Date:  2022-04-27

6.  Identification of potentially functional circRNAs and prediction of circRNA-miRNA-mRNA regulatory network in periodontitis: Bridging the gap between bioinformatics and clinical needs.

Authors:  Weijun Yu; Qisheng Gu; Di Wu; Weiqi Zhang; Gang Li; Lu Lin; Jared M Lowe; Shucheng Hu; Tia Wenjun Li; Zhen Zhou; Michael Z Miao; Yuhua Gong; Yifei Zhao; Eryi Lu
Journal:  J Periodontal Res       Date:  2022-04-06       Impact factor: 3.946

Review 7.  A New World of Biomarkers and Therapeutics for Female Reproductive System and Breast Cancers: Circular RNAs.

Authors:  Anh M Tran; Ghanbar Mahmoodi Chalbatani; Lea Berland; Mireia Cruz De Los Santos; Priyank Raj; Seyed Amir Jalali; Elahe Gharagouzloo; Cristina Ivan; Mihnea P Dragomir; George A Calin
Journal:  Front Cell Dev Biol       Date:  2020-03-09

Review 8.  Circular RNAs Are Regulators of Diverse Animal Transcriptomes: One Health Perspective.

Authors:  Dora Zucko; Kathleen Boris-Lawrie
Journal:  Front Genet       Date:  2020-09-18       Impact factor: 4.599

  8 in total

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