Literature DB >> 30257203

Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin.

Gen Zhang1, Shikui Tu2, Tianxiong Yu2, Xiao-Ou Zhang2, Swapnil S Parhad1, Zhiping Weng3, William E Theurkauf4.   

Abstract

In Drosophila, the piRNAs that guide germline transposon silencing are produced from heterochromatic clusters marked by the HP1 homolog Rhino. We show that Rhino promotes cluster transcript association with UAP56 and the THO complex, forming RNA-protein assemblies that are unique to piRNA precursors. UAP56 and THO are ubiquitous RNA-processing factors, and null alleles of uap56 and the THO subunit gene tho2 are lethal. However, uap56sz15 and mutations in the THO subunit genes thoc5 and thoc7 are viable but sterile and disrupt piRNA biogenesis. The uap56sz15 allele reduces UAP56 binding to THO, and the thoc5 and thoc7 mutations disrupt interactions among the remaining THO subunits and UAP56 binding to the core THO subunit Hpr1. These mutations also reduce Rhino binding to clusters and trigger Rhino binding to ectopic sites across the genome. Rhino thus promotes assembly of piRNA precursor complexes, and these complexes restrict Rhino at cluster heterochromatin.
Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Drosophilia; heterochromatin; piRNA; transposon silencing

Year:  2018        PMID: 30257203      PMCID: PMC6235161          DOI: 10.1016/j.celrep.2018.08.081

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  54 in total

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Review 2.  PIWI-Interacting RNA: Its Biogenesis and Functions.

Authors:  Yuka W Iwasaki; Mikiko C Siomi; Haruhiko Siomi
Journal:  Annu Rev Biochem       Date:  2015-03-05       Impact factor: 23.643

3.  Adaptive Evolution Leads to Cross-Species Incompatibility in the piRNA Transposon Silencing Machinery.

Authors:  Swapnil S Parhad; Shikui Tu; Zhiping Weng; William E Theurkauf
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4.  Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster.

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7.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

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  11 in total

1.  The piRNA Response to Retroviral Invasion of the Koala Genome.

Authors:  Tianxiong Yu; Birgit S Koppetsch; Sara Pagliarani; Stephen Johnston; Noah J Silverstein; Jeremy Luban; Keith Chappell; Zhiping Weng; William E Theurkauf
Journal:  Cell       Date:  2019-10-10       Impact factor: 41.582

Review 2.  Taming the Turmoil Within: New Insights on the Containment of Transposable Elements.

Authors:  Erin S Kelleher; Daniel A Barbash; Justin P Blumenstiel
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3.  piRNA-independent transposon silencing by the Drosophila THO complex.

Authors:  Gen Zhang; Tianxiong Yu; Swapnil S Parhad; Samantha Ho; Zhiping Weng; William E Theurkauf
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4.  The Drosophila ZAD zinc finger protein Kipferl guides Rhino to piRNA clusters.

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Review 5.  Emerging roles and functional mechanisms of PIWI-interacting RNAs.

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6.  Rapid evolution and conserved function of the piRNA pathway.

Authors:  Swapnil S Parhad; William E Theurkauf
Journal:  Open Biol       Date:  2019-01-31       Impact factor: 6.411

7.  Specialization of the Drosophila nuclear export family protein Nxf3 for piRNA precursor export.

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9.  Nuclear Ccr4-Not mediates the degradation of telomeric and transposon transcripts at chromatin in the Drosophila germline.

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10.  Adaptive Evolution Targets a piRNA Precursor Transcription Network.

Authors:  Swapnil S Parhad; Tianxiong Yu; Gen Zhang; Nicholas P Rice; Zhiping Weng; William E Theurkauf
Journal:  Cell Rep       Date:  2020-02-25       Impact factor: 9.423

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